| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89055188
Identifier: 89055188
GI number: 89055188
Start: 2708446
End: 2708865
Strand: Direct
Name: 89055188
Synonym: Jann_2697
Alternate gene names: NA
Gene position: 2708446-2708865 (Clockwise)
Preceding gene: 89055178
Following gene: 89055201
Centisome position: 62.72
GC content: 68.57
Gene sequence:
>420_bases ATGGACATGTCCGGAGTGCCAGTCGCGCCTGCGCTGACGGTGGCCAACCGTGCCACGACACTGCCTGCGGCGACGCCCGG CAGTGACATCCGCCCAGACCAGCGCGCCGAACCCGTCGATCCCACGCAATTGCCAGCGCCGATCAAGGGCCTGGGCATCG CGCCGCTGGATCTGTTTCAGGTGGGCGACAACGATGATGTTCCCCTGCCGCCGAACCCGCCCCGTGACCCTATCGCGATG GTGACCCCGCTGGACTTCACAGATGACCAGCCCGTGACCGAGGTTGAGGTCGAGGGTCCCGCCCAGGACGCGCCCGCGCC GGACCTGGATCTGCCGAAAGAGCCTGCCCCCGAATTGGCCCGCGCCGTTCAGGTGCTGGACGACGAACCCCGCGCGCCCT CCTTCGACATTCGCCGCTGA
Upstream 100 bases:
>100_bases TGCCTGCGTTAACCTATCGGAAAGGTCCTGTGGGTAGTTTTCTCGCGGCTGCGCGCGGTATCTCCGCCTGTTGGCCCGCA AGACGGAAAGGAGCTTTTCC
Downstream 100 bases:
>100_bases CACACCTGGCCCATGCCATGCCCGGCCCGGCCTAGCGCGGCCCCGCACGGCCTATGAACGCCCGACCAACACAGCGGTCG TCCGTTTCTCGCGCCCATTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 139; Mature: 139
Protein sequence:
>139_residues MDMSGVPVAPALTVANRATTLPAATPGSDIRPDQRAEPVDPTQLPAPIKGLGIAPLDLFQVGDNDDVPLPPNPPRDPIAM VTPLDFTDDQPVTEVEVEGPAQDAPAPDLDLPKEPAPELARAVQVLDDEPRAPSFDIRR
Sequences:
>Translated_139_residues MDMSGVPVAPALTVANRATTLPAATPGSDIRPDQRAEPVDPTQLPAPIKGLGIAPLDLFQVGDNDDVPLPPNPPRDPIAM VTPLDFTDDQPVTEVEVEGPAQDAPAPDLDLPKEPAPELARAVQVLDDEPRAPSFDIRR >Mature_139_residues MDMSGVPVAPALTVANRATTLPAATPGSDIRPDQRAEPVDPTQLPAPIKGLGIAPLDLFQVGDNDDVPLPPNPPRDPIAM VTPLDFTDDQPVTEVEVEGPAQDAPAPDLDLPKEPAPELARAVQVLDDEPRAPSFDIRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14705; Mature: 14705
Theoretical pI: Translated: 3.81; Mature: 3.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDMSGVPVAPALTVANRATTLPAATPGSDIRPDQRAEPVDPTQLPAPIKGLGIAPLDLFQ CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE VGDNDDVPLPPNPPRDPIAMVTPLDFTDDQPVTEVEVEGPAQDAPAPDLDLPKEPAPELA CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHH RAVQVLDDEPRAPSFDIRR HHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MDMSGVPVAPALTVANRATTLPAATPGSDIRPDQRAEPVDPTQLPAPIKGLGIAPLDLFQ CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE VGDNDDVPLPPNPPRDPIAMVTPLDFTDDQPVTEVEVEGPAQDAPAPDLDLPKEPAPELA CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHH RAVQVLDDEPRAPSFDIRR HHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA