Click here to switch to the map view.

The map label for this gene is lig [H]

Identifier: 89055156

GI number: 89055156

Start: 2675576

End: 2676583

Strand: Direct

Name: lig [H]

Synonym: Jann_2665

Alternate gene names: 89055156

Gene position: 2675576-2676583 (Clockwise)

Preceding gene: 89055155

Following gene: 89055157

Centisome position: 61.96

GC content: 64.58

Gene sequence:

>1008_bases
ATGGTTCTGGAATTCACCGAACGCGGCATCTATTGCCCCGCAGCTGACGCCTATATTGACCCTTGGCGCCCGGTGCCTCG
GGCCTTGATCACACATGGTCATTCTGATCACGCGCGACCTGGCCACGGGGCTTATCTGGCGACCGAGGGCTCCGCGCCCG
TCATGCGTCACCGCCTGGGCGATATCCAGATGGAGACGACCGCTTACGGCGTCACCCACCAGATCGGCGATGCCCGGATC
AGCTTTCACCCGGCAGGCCACGTGCCCGGCTCCGCGCAGATCCGCGTCGAAGTGGGCGGGGAGGTCTGGGTCGCTTCCGG
TGACTACAAGACCATCAACGATGGCCTGTCTGAGCCGTTTGAGCCGGTGCGCTGCGACACGTTTATCACCGAATCCACCT
TCGGCCTGCCGATCTATGATTGGCCCGCGCAGCACGCCCTCGCCCGCGATCTCAACGACTGGTGGGCGACATGCGTGGCG
GATGGAAAACGCGCCGTCCTCGGCGTCTATGCCCTTGGAAAAGCCCAACGGATCATGCGCCTGCTGGATCCGGCCATTGG
CCCGATCCTGACCCACGGCGCGGTGGAGGCAACCAACCGCGTTTTGCGCGGACAAGGCATCAGCCTGCCCGATACGGTGC
CCGTCGTGGACGGCGTTGATGGCAAATCTCACCCCAACGCCATTGTGCTCGCCCCGCCCTCCGCCCTCGGAACCACATGG
ATGAAGCGTTTTGGCGCGGTCTCCACCGGTTTCGCCTCGGGCTGGATGCGCCTGCGCGGTGTGCGCCGCAGGCGCGCGGC
GGATCGGGGCTTCGTGGTCAGCGACCATGCCGATTGGAAGGGTTTGAACGCAGCCATCGCGGCGACCGAGGCCGACCGGG
TCTTCGTAACCCACGGCTACACCGCGCAATTTTCCCAATGGCTTGGTGAGCAAGGCTATCAGGCGGGTATCGTCGAGACG
GAATTTGGCGGAGAGGACCTTGATGAGGCCGAGGAGACGGCGGCATGA

Upstream 100 bases:

>100_bases
CCCTCGCCGCAGGCACGGCATCGCTTGCGCCGTGGCAAGGCCACAGGAATAGTTCCCCGCGCCTCTCGCCGCATGGGCAA
CGGCGCTCTATATTCAAAAC

Downstream 100 bases:

>100_bases
GCGTGCTGACCCGCGCCGACCGAATCTCGACGTGGACTGCGCGCCGCATCGAGAAACCGCTGCTGTCCATGATCGGCTCG
CAACAGATGTTGCGCGCACT

Product: putative mRNA 3-end processing factor

Products: NA

Alternate protein names: Polydeoxyribonucleotide synthase [ATP] [H]

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MVLEFTERGIYCPAADAYIDPWRPVPRALITHGHSDHARPGHGAYLATEGSAPVMRHRLGDIQMETTAYGVTHQIGDARI
SFHPAGHVPGSAQIRVEVGGEVWVASGDYKTINDGLSEPFEPVRCDTFITESTFGLPIYDWPAQHALARDLNDWWATCVA
DGKRAVLGVYALGKAQRIMRLLDPAIGPILTHGAVEATNRVLRGQGISLPDTVPVVDGVDGKSHPNAIVLAPPSALGTTW
MKRFGAVSTGFASGWMRLRGVRRRRAADRGFVVSDHADWKGLNAAIAATEADRVFVTHGYTAQFSQWLGEQGYQAGIVET
EFGGEDLDEAEETAA

Sequences:

>Translated_335_residues
MVLEFTERGIYCPAADAYIDPWRPVPRALITHGHSDHARPGHGAYLATEGSAPVMRHRLGDIQMETTAYGVTHQIGDARI
SFHPAGHVPGSAQIRVEVGGEVWVASGDYKTINDGLSEPFEPVRCDTFITESTFGLPIYDWPAQHALARDLNDWWATCVA
DGKRAVLGVYALGKAQRIMRLLDPAIGPILTHGAVEATNRVLRGQGISLPDTVPVVDGVDGKSHPNAIVLAPPSALGTTW
MKRFGAVSTGFASGWMRLRGVRRRRAADRGFVVSDHADWKGLNAAIAATEADRVFVTHGYTAQFSQWLGEQGYQAGIVET
EFGGEDLDEAEETAA
>Mature_335_residues
MVLEFTERGIYCPAADAYIDPWRPVPRALITHGHSDHARPGHGAYLATEGSAPVMRHRLGDIQMETTAYGVTHQIGDARI
SFHPAGHVPGSAQIRVEVGGEVWVASGDYKTINDGLSEPFEPVRCDTFITESTFGLPIYDWPAQHALARDLNDWWATCVA
DGKRAVLGVYALGKAQRIMRLLDPAIGPILTHGAVEATNRVLRGQGISLPDTVPVVDGVDGKSHPNAIVLAPPSALGTTW
MKRFGAVSTGFASGWMRLRGVRRRRAADRGFVVSDHADWKGLNAAIAATEADRVFVTHGYTAQFSQWLGEQGYQAGIVET
EFGGEDLDEAEETAA

Specific function: DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair [H]

COG id: COG1236

COG function: function code J; Predicted exonuclease of the beta-lactamase fold involved in RNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the ATP- dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000977
- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR016059
- InterPro:   IPR012308
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR011108 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF04675 DNA_ligase_A_N; PF07521 RMMBL [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 36248; Mature: 36248

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLEFTERGIYCPAADAYIDPWRPVPRALITHGHSDHARPGHGAYLATEGSAPVMRHRLG
CEEEECCCCEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHC
DIQMETTAYGVTHQIGDARISFHPAGHVPGSAQIRVEVGGEVWVASGDYKTINDGLSEPF
CEEEEEEEECEEEECCCCEEEEECCCCCCCCEEEEEEECCEEEEECCCCEEHHHHHCCCC
EPVRCDTFITESTFGLPIYDWPAQHALARDLNDWWATCVADGKRAVLGVYALGKAQRIMR
CCCCCCEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHH
LLDPAIGPILTHGAVEATNRVLRGQGISLPDTVPVVDGVDGKSHPNAIVLAPPSALGTTW
HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCEEEECCCHHHHHHH
MKRFGAVSTGFASGWMRLRGVRRRRAADRGFVVSDHADWKGLNAAIAATEADRVFVTHGY
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCEEEEECCC
TAQFSQWLGEQGYQAGIVETEFGGEDLDEAEETAA
HHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHCC
>Mature Secondary Structure
MVLEFTERGIYCPAADAYIDPWRPVPRALITHGHSDHARPGHGAYLATEGSAPVMRHRLG
CEEEECCCCEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHC
DIQMETTAYGVTHQIGDARISFHPAGHVPGSAQIRVEVGGEVWVASGDYKTINDGLSEPF
CEEEEEEEECEEEECCCCEEEEECCCCCCCCEEEEEEECCEEEEECCCCEEHHHHHCCCC
EPVRCDTFITESTFGLPIYDWPAQHALARDLNDWWATCVADGKRAVLGVYALGKAQRIMR
CCCCCCEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHH
LLDPAIGPILTHGAVEATNRVLRGQGISLPDTVPVVDGVDGKSHPNAIVLAPPSALGTTW
HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCEEEECCCHHHHHHH
MKRFGAVSTGFASGWMRLRGVRRRRAADRGFVVSDHADWKGLNAAIAATEADRVFVTHGY
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCEEEEECCC
TAQFSQWLGEQGYQAGIVETEFGGEDLDEAEETAA
HHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA