| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is dicA [C]
Identifier: 89055144
GI number: 89055144
Start: 2665856
End: 2666257
Strand: Reverse
Name: dicA [C]
Synonym: Jann_2653
Alternate gene names: 89055144
Gene position: 2666257-2665856 (Counterclockwise)
Preceding gene: 89055146
Following gene: 89055143
Centisome position: 61.75
GC content: 64.68
Gene sequence:
>402_bases ATGGAAGACCAGGCACACGACGGGACCACATGGTTCGATGCAGAGACCACGACCTTCGGCGACCGCGTCACCGGCGCACG GGAAGCGGCGGGCCTGTCGCAGCCGGAATTGGCCAAGCGCCTGGGCGTGCGGGTCAAGACGATCCGCGCGTGGGAGCAGG ACCAGTCTGAGCCGAGGGCCAATAAACTCGGCACCTTGGCGGGCATTCTGGGCGTGTCGATGATGTGGCTTCTGGCGGGG CAGGGCGAAGGGCTCGATAGCCCCGAGCTGTCCGATCCGCTGGATGGAGACATTGAGAAGATCCTGATCGACCTGCGTCA GATGCGGCAGGAGCAGGTGTCGCTGGCTGAGCGTATGGGGTTGATCGAGAAGCGCCTGCGCGCGGCGTTGGGCAATTCAT GA
Upstream 100 bases:
>100_bases CGTCCTTTGGGATGGAGCCCGCGCAAACGGGCCTATATTACGTGTAGGGGTTGCATAGAGCGGCCTTCAGGCGCGATCAA CCTCTAGGAGGGACATTCCG
Downstream 100 bases:
>100_bases GCGAGCCGCGTGAGATCCGCCTGAAACGGCTGCGCCTGCGGGCGTGGCATCGGGGCATCAAGGAAATGGACCTGATCCTG GGCGGTTGGGCCGACCGGAA
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; XRE Family Transcriptional Regulator; Transcription Regulator Protein; Transcriptional Regulator; Helix-Turn-Helix Domain Protein
Number of amino acids: Translated: 133; Mature: 133
Protein sequence:
>133_residues MEDQAHDGTTWFDAETTTFGDRVTGAREAAGLSQPELAKRLGVRVKTIRAWEQDQSEPRANKLGTLAGILGVSMMWLLAG QGEGLDSPELSDPLDGDIEKILIDLRQMRQEQVSLAERMGLIEKRLRAALGNS
Sequences:
>Translated_133_residues MEDQAHDGTTWFDAETTTFGDRVTGAREAAGLSQPELAKRLGVRVKTIRAWEQDQSEPRANKLGTLAGILGVSMMWLLAG QGEGLDSPELSDPLDGDIEKILIDLRQMRQEQVSLAERMGLIEKRLRAALGNS >Mature_133_residues MEDQAHDGTTWFDAETTTFGDRVTGAREAAGLSQPELAKRLGVRVKTIRAWEQDQSEPRANKLGTLAGILGVSMMWLLAG QGEGLDSPELSDPLDGDIEKILIDLRQMRQEQVSLAERMGLIEKRLRAALGNS
Specific function: This Protein Is A Repressor Of Division Inhibition Gene Dicb. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14605; Mature: 14605
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDQAHDGTTWFDAETTTFGDRVTGAREAAGLSQPELAKRLGVRVKTIRAWEQDQSEPRA CCCCCCCCCEEECCCCCCCCCHHCCHHHHCCCCCHHHHHHHCCHHHHHHHHHHCCCCCHH NKLGTLAGILGVSMMWLLAGQGEGLDSPELSDPLDGDIEKILIDLRQMRQEQVSLAERMG HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LIEKRLRAALGNS HHHHHHHHHHCCC >Mature Secondary Structure MEDQAHDGTTWFDAETTTFGDRVTGAREAAGLSQPELAKRLGVRVKTIRAWEQDQSEPRA CCCCCCCCCEEECCCCCCCCCHHCCHHHHCCCCCHHHHHHHCCHHHHHHHHHHCCCCCHH NKLGTLAGILGVSMMWLLAGQGEGLDSPELSDPLDGDIEKILIDLRQMRQEQVSLAERMG HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LIEKRLRAALGNS HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA