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The map label for this gene is ycfQ [H]

Identifier: 89055122

GI number: 89055122

Start: 2647133

End: 2647726

Strand: Direct

Name: ycfQ [H]

Synonym: Jann_2631

Alternate gene names: 89055122

Gene position: 2647133-2647726 (Clockwise)

Preceding gene: 89055116

Following gene: 89055124

Centisome position: 61.3

GC content: 59.26

Gene sequence:

>594_bases
ATGGCCCGCCCCCGTTCCTTCCAAGAAGACGATGTGATTGACCGCGCGATGCGGGCGTTTTGGCTGAATGGTTATGATGC
GACCGCCATCGGCGACCTCGAACAAGCCACCGGCATCAAACGGATCAGCATCTACAACGTATGGGGAGATAAAGAAGGGC
TCTTCCTTGCCGCCTTGGATCGCTATCATGGCAAAGCCGTTGAGATTTACGACGAGACAGTCGCAGCGGGCGGGCTTGAT
GAAATCGCGGGTCTCTTTGACATGATGTCGGCCCCGGCTCCTCGCGACGCACCGGCGCATGCGGGATGCCTGATGGTAAA
CACCATCCTCGATGTCAGACGCGTCTCGGAGCCGATCCGGCAACGTGTTCTGGACTACCGCGCCATGTTAAAAAGCGCGT
TCCGCTCCGCACTGGTAACCGCGCGTGAGCATGGCGATATGACGTGCGATGATGACACGCTGGACCGACGCGCAGATTTT
CTGGTTGGGATCCTATGGGGCGCGCTTGCGACAATCCGCGTCAATGCCGATACCACCGCGGCCCGGCCTATTGCCTTGGA
AACGGCTAAAACAATCGCGGCGTGGCGCACGTAG

Upstream 100 bases:

>100_bases
TTCAGATTATTCTGAAACGCTTGTTATAAAACGTCTAGCGTTGGCAAATACTCAGCGCAAGCATAATATACCGATGATTA
TAAAATAAATGTGAGCAGCC

Downstream 100 bases:

>100_bases
ATGGCAAGAAGTTCGCGGTGTTGGTGTCAGCCGCGACGCGGGCCGGTCTGCCGGTGTGTCTGCTGAACATTTGCCCGCAG
CGTGGGCAAACTTTTGCGCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MARPRSFQEDDVIDRAMRAFWLNGYDATAIGDLEQATGIKRISIYNVWGDKEGLFLAALDRYHGKAVEIYDETVAAGGLD
EIAGLFDMMSAPAPRDAPAHAGCLMVNTILDVRRVSEPIRQRVLDYRAMLKSAFRSALVTAREHGDMTCDDDTLDRRADF
LVGILWGALATIRVNADTTAARPIALETAKTIAAWRT

Sequences:

>Translated_197_residues
MARPRSFQEDDVIDRAMRAFWLNGYDATAIGDLEQATGIKRISIYNVWGDKEGLFLAALDRYHGKAVEIYDETVAAGGLD
EIAGLFDMMSAPAPRDAPAHAGCLMVNTILDVRRVSEPIRQRVLDYRAMLKSAFRSALVTAREHGDMTCDDDTLDRRADF
LVGILWGALATIRVNADTTAARPIALETAKTIAAWRT
>Mature_196_residues
ARPRSFQEDDVIDRAMRAFWLNGYDATAIGDLEQATGIKRISIYNVWGDKEGLFLAALDRYHGKAVEIYDETVAAGGLDE
IAGLFDMMSAPAPRDAPAHAGCLMVNTILDVRRVSEPIRQRVLDYRAMLKSAFRSALVTAREHGDMTCDDDTLDRRADFL
VGILWGALATIRVNADTTAARPIALETAKTIAAWRT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=192, Percent_Identity=30.7291666666667, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21761; Mature: 21630

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPRSFQEDDVIDRAMRAFWLNGYDATAIGDLEQATGIKRISIYNVWGDKEGLFLAALD
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEEEEEECCCCCCEEEEEHH
RYHGKAVEIYDETVAAGGLDEIAGLFDMMSAPAPRDAPAHAGCLMVNTILDVRRVSEPIR
HHCCCEEEEEHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
QRVLDYRAMLKSAFRSALVTAREHGDMTCDDDTLDRRADFLVGILWGALATIRVNADTTA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCC
ARPIALETAKTIAAWRT
CCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
ARPRSFQEDDVIDRAMRAFWLNGYDATAIGDLEQATGIKRISIYNVWGDKEGLFLAALD
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEEEEEECCCCCCEEEEEHH
RYHGKAVEIYDETVAAGGLDEIAGLFDMMSAPAPRDAPAHAGCLMVNTILDVRRVSEPIR
HHCCCEEEEEHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
QRVLDYRAMLKSAFRSALVTAREHGDMTCDDDTLDRRADFLVGILWGALATIRVNADTTA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCC
ARPIALETAKTIAAWRT
CCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]