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The map label for this gene is rbsC [H]

Identifier: 89055088

GI number: 89055088

Start: 2610335

End: 2611327

Strand: Direct

Name: rbsC [H]

Synonym: Jann_2597

Alternate gene names: 89055088

Gene position: 2610335-2611327 (Clockwise)

Preceding gene: 89055087

Following gene: 89055089

Centisome position: 60.45

GC content: 61.73

Gene sequence:

>993_bases
ATGAGTGACGCAAGACACATCCCCGACCGTCTGCGAAGCCCGGCGCTCAAGGCGTTCAAGTCGTGGGAGACGCTGCTGCT
GGCCGTGGCCATCGCGATTTTCATCACCAACTCCTTCCTGTCGCCCTATTTCCTGAACGCGTGGAACCTGAGCGACGCGA
CCTTCAACTTCACCGAAAAGGCCATGATCGCCTTCGCCATGGCCCTGCTGATCGTCGCAGGCGAGATCGACCTGTCCGTC
GCCTCCATCATCGCGCTTGCCTCCACCGCGATGGGCTATGCGCTGCAATTCGATGTGGGTGTGGTGGGTTTGGTGCTGAT
CGGGCTCGGCACGGGCGTCTTGTGCGGCGCATTCAACGGCGCGCTGGTGACGAGCCTTGGCCTGCCGTCCATCGTTGTGA
CCATCGGCACGATGAGCCTCTTTCGCGGCATCTCCTACATCGTGCTCGGCGATCAGGGGTTCCGGGGCTATCCGCCCGAG
TTCAGCTATTTCGGGCAGGGTTACGTCTACTGGGTAATCTCGTTTGAATTCGTCCTCTTCGCCATCCTCGCGGTCGTTTA
TTACGTGCTCCTGCACCGCACCAATTTTGGCCGCGCGGTCTACGCCATTGGCAACAACCCCACCGGCGCATTGTTCTCGG
GCATCCGCGTGGCGCGGGTAAAGTTTATCCTGTTCCTCCTCACGGGACTGATGGCTGGCCTCGCGGCAATCTGCCTGACC
GCCCGCCTCGGCTCCACCCGCCCGACCATCGCCCTGGGGTGGGAGTTGGAGATTGTCACAATGGTGGTCCTTGGCGGCGT
CAACATCCTGGGCGGGTCCGGCAGCATCCCCGGCGTCGTCATCGCGGCCTTCGTCATGGGGCTTGTCACCTTTGGTCTGG
GCCTTCTGAACGTGCCCGGCATCGTGATGTCCATTTTCATCGGCTGCCTATTGATCGGTGTGATCGCCCTGCCCCGGCTC
TGGTCCCAATTTCAACACGCCCGGAGGAGATGA

Upstream 100 bases:

>100_bases
AGCTGGCGATTTCCGGGGCGGCCATCGTGATCGCCGTGGCCTTCAACGCCCGCGCAGGCCGGGCAAAGGGGCGCATCATC
CTGAAGAAGGCGGAAGCGGT

Downstream 100 bases:

>100_bases
TGGAGAAATACGCCTTCAAGATGCAGCTCACGCCCGGGTGCCTTGCCGAATACCGCAAGCGCCATGACGAGATCTGGCCA
GAGCTGGTGGATCTGCTGCA

Product: inner-membrane translocator

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MSDARHIPDRLRSPALKAFKSWETLLLAVAIAIFITNSFLSPYFLNAWNLSDATFNFTEKAMIAFAMALLIVAGEIDLSV
ASIIALASTAMGYALQFDVGVVGLVLIGLGTGVLCGAFNGALVTSLGLPSIVVTIGTMSLFRGISYIVLGDQGFRGYPPE
FSYFGQGYVYWVISFEFVLFAILAVVYYVLLHRTNFGRAVYAIGNNPTGALFSGIRVARVKFILFLLTGLMAGLAAICLT
ARLGSTRPTIALGWELEIVTMVVLGGVNILGGSGSIPGVVIAAFVMGLVTFGLGLLNVPGIVMSIFIGCLLIGVIALPRL
WSQFQHARRR

Sequences:

>Translated_330_residues
MSDARHIPDRLRSPALKAFKSWETLLLAVAIAIFITNSFLSPYFLNAWNLSDATFNFTEKAMIAFAMALLIVAGEIDLSV
ASIIALASTAMGYALQFDVGVVGLVLIGLGTGVLCGAFNGALVTSLGLPSIVVTIGTMSLFRGISYIVLGDQGFRGYPPE
FSYFGQGYVYWVISFEFVLFAILAVVYYVLLHRTNFGRAVYAIGNNPTGALFSGIRVARVKFILFLLTGLMAGLAAICLT
ARLGSTRPTIALGWELEIVTMVVLGGVNILGGSGSIPGVVIAAFVMGLVTFGLGLLNVPGIVMSIFIGCLLIGVIALPRL
WSQFQHARRR
>Mature_329_residues
SDARHIPDRLRSPALKAFKSWETLLLAVAIAIFITNSFLSPYFLNAWNLSDATFNFTEKAMIAFAMALLIVAGEIDLSVA
SIIALASTAMGYALQFDVGVVGLVLIGLGTGVLCGAFNGALVTSLGLPSIVVTIGTMSLFRGISYIVLGDQGFRGYPPEF
SYFGQGYVYWVISFEFVLFAILAVVYYVLLHRTNFGRAVYAIGNNPTGALFSGIRVARVKFILFLLTGLMAGLAAICLTA
RLGSTRPTIALGWELEIVTMVVLGGVNILGGSGSIPGVVIAAFVMGLVTFGLGLLNVPGIVMSIFIGCLLIGVIALPRLW
SQFQHARRR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=310, Percent_Identity=31.9354838709677, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787794, Length=300, Percent_Identity=34, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790191, Length=287, Percent_Identity=33.4494773519164, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790524, Length=301, Percent_Identity=31.8936877076412, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1788896, Length=325, Percent_Identity=31.0769230769231, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=37.2262773722628, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI87082395, Length=282, Percent_Identity=31.2056737588652, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787793, Length=297, Percent_Identity=30.6397306397306, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI145693214, Length=216, Percent_Identity=31.4814814814815, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788471, Length=325, Percent_Identity=28.9230769230769, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35233; Mature: 35102

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDARHIPDRLRSPALKAFKSWETLLLAVAIAIFITNSFLSPYFLNAWNLSDATFNFTEK
CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCCCCHHHH
AMIAFAMALLIVAGEIDLSVASIIALASTAMGYALQFDVGVVGLVLIGLGTGVLCGAFNG
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCHHHHHCCCC
ALVTSLGLPSIVVTIGTMSLFRGISYIVLGDQGFRGYPPEFSYFGQGYVYWVISFEFVLF
HHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHH
AILAVVYYVLLHRTNFGRAVYAIGNNPTGALFSGIRVARVKFILFLLTGLMAGLAAICLT
HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLGSTRPTIALGWELEIVTMVVLGGVNILGGSGSIPGVVIAAFVMGLVTFGLGLLNVPG
HHCCCCCCCEEECCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
IVMSIFIGCLLIGVIALPRLWSQFQHARRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDARHIPDRLRSPALKAFKSWETLLLAVAIAIFITNSFLSPYFLNAWNLSDATFNFTEK
CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCCCCHHHH
AMIAFAMALLIVAGEIDLSVASIIALASTAMGYALQFDVGVVGLVLIGLGTGVLCGAFNG
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCHHHHHCCCC
ALVTSLGLPSIVVTIGTMSLFRGISYIVLGDQGFRGYPPEFSYFGQGYVYWVISFEFVLF
HHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHH
AILAVVYYVLLHRTNFGRAVYAIGNNPTGALFSGIRVARVKFILFLLTGLMAGLAAICLT
HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLGSTRPTIALGWELEIVTMVVLGGVNILGGSGSIPGVVIAAFVMGLVTFGLGLLNVPG
HHCCCCCCCEEECCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
IVMSIFIGCLLIGVIALPRLWSQFQHARRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]