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The map label for this gene is rbsC [H]

Identifier: 89055087

GI number: 89055087

Start: 2609361

End: 2610338

Strand: Direct

Name: rbsC [H]

Synonym: Jann_2596

Alternate gene names: 89055087

Gene position: 2609361-2610338 (Clockwise)

Preceding gene: 89055086

Following gene: 89055088

Centisome position: 60.43

GC content: 62.17

Gene sequence:

>978_bases
ATGATGCGCATTCTGAAATCGCGGGAGGTCTTGTTGGTGGGTGTGATCCTTGCCCTCACCGCCCTGATTGCCAGCCGCTT
TCCGGCCTTCATCGCACCCGCGAATCTGGTCAACGTCTTCACCGATACCTCTCCGCTGATCATCCTCGCCATCGGGCAGG
CCATCGTGATTTTGACGCGCTGCATTGACCTGTCCGTCGCGTCGAACCTGGCGCTGACCGGCATGGTCTGCGCGATGCTC
AACGTCGCCTATCCCGGCCTGCCCGTCCCGGTGATCCTTGTCATCGCCATGGGTTTGGGTGCGATCCTTGGGGCGTTCAA
TGGCATCCTCGTCTGGAAGCTGTCTATCCCGCCCATCGTCGTGACGCTTGGCACACTCACCATCTACCGAGGGCTTATCT
TCGTCATTTCCGATGGCGCGTGGGTGAATGCCCATGAGATGTCGCCCGCATTCACCGGGTTCATCCGCGTTGTGATCCTC
GGCCTGCCTGTGCAGGCATGGTTCGCCATCCTCACCGCCGCAATGGTGTTTGTCGTCATCGCCCGCACCCCGTTGGGGCG
CGCGTTTTACGCCGTGGGCGGCAACCCCCATGCGGCAGTTTACACAGGCCTCAACGTGGGCAAAACGCAGTTCTGCGCCT
TCGTGATCTCGGGCACGTTGGCAGGATTGGTGGGATACCTCTGGGTCGCGCGCTATTCCGTGGCCTATGTGGACATCGCC
AAAGGGTTCGAGCTGGAGGTCGTGGCGGCTTGCGTCATCGGTGGCATCGCGATTGCGGGCGGCGCGGGCACAGTGATGGG
CGCTATCCTCGGCGCGATCTTCTTGGGCATCATCAAGAACGCACTGCCCGTGGTGGGGATATCGCCATTCTGGCAGCTGG
CGATTTCCGGGGCGGCCATCGTGATCGCCGTGGCCTTCAACGCCCGCGCAGGCCGGGCAAAGGGGCGCATCATCCTGAAG
AAGGCGGAAGCGGTATGA

Upstream 100 bases:

>100_bases
CGGCGGAACTGGACCGCGCGGACCTCAGCCCCGAGGTGCTTGTGCGCCATGCCGCAGGGATTGGACCAAAGGTCCATGAG
AACGAGATGGAAGAGCGGCC

Downstream 100 bases:

>100_bases
GTGACGCAAGACACATCCCCGACCGTCTGCGAAGCCCGGCGCTCAAGGCGTTCAAGTCGTGGGAGACGCTGCTGCTGGCC
GTGGCCATCGCGATTTTCAT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MMRILKSREVLLVGVILALTALIASRFPAFIAPANLVNVFTDTSPLIILAIGQAIVILTRCIDLSVASNLALTGMVCAML
NVAYPGLPVPVILVIAMGLGAILGAFNGILVWKLSIPPIVVTLGTLTIYRGLIFVISDGAWVNAHEMSPAFTGFIRVVIL
GLPVQAWFAILTAAMVFVVIARTPLGRAFYAVGGNPHAAVYTGLNVGKTQFCAFVISGTLAGLVGYLWVARYSVAYVDIA
KGFELEVVAACVIGGIAIAGGAGTVMGAILGAIFLGIIKNALPVVGISPFWQLAISGAAIVIAVAFNARAGRAKGRIILK
KAEAV

Sequences:

>Translated_325_residues
MMRILKSREVLLVGVILALTALIASRFPAFIAPANLVNVFTDTSPLIILAIGQAIVILTRCIDLSVASNLALTGMVCAML
NVAYPGLPVPVILVIAMGLGAILGAFNGILVWKLSIPPIVVTLGTLTIYRGLIFVISDGAWVNAHEMSPAFTGFIRVVIL
GLPVQAWFAILTAAMVFVVIARTPLGRAFYAVGGNPHAAVYTGLNVGKTQFCAFVISGTLAGLVGYLWVARYSVAYVDIA
KGFELEVVAACVIGGIAIAGGAGTVMGAILGAIFLGIIKNALPVVGISPFWQLAISGAAIVIAVAFNARAGRAKGRIILK
KAEAV
>Mature_325_residues
MMRILKSREVLLVGVILALTALIASRFPAFIAPANLVNVFTDTSPLIILAIGQAIVILTRCIDLSVASNLALTGMVCAML
NVAYPGLPVPVILVIAMGLGAILGAFNGILVWKLSIPPIVVTLGTLTIYRGLIFVISDGAWVNAHEMSPAFTGFIRVVIL
GLPVQAWFAILTAAMVFVVIARTPLGRAFYAVGGNPHAAVYTGLNVGKTQFCAFVISGTLAGLVGYLWVARYSVAYVDIA
KGFELEVVAACVIGGIAIAGGAGTVMGAILGAIFLGIIKNALPVVGISPFWQLAISGAAIVIAVAFNARAGRAKGRIILK
KAEAV

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790524, Length=278, Percent_Identity=34.8920863309352, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1790191, Length=298, Percent_Identity=33.8926174496644, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI1787793, Length=296, Percent_Identity=33.445945945946, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789992, Length=343, Percent_Identity=30.6122448979592, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788896, Length=317, Percent_Identity=32.4921135646688, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI145693152, Length=208, Percent_Identity=33.1730769230769, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788471, Length=318, Percent_Identity=33.6477987421384, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87082395, Length=273, Percent_Identity=30.7692307692308, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1787794, Length=299, Percent_Identity=28.0936454849498, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI145693214, Length=254, Percent_Identity=32.2834645669291, Blast_Score=85, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33709; Mature: 33709

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRILKSREVLLVGVILALTALIASRFPAFIAPANLVNVFTDTSPLIILAIGQAIVILTR
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCEEEEEHHHHHHHHHH
CIDLSVASNLALTGMVCAMLNVAYPGLPVPVILVIAMGLGAILGAFNGILVWKLSIPPIV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
VTLGTLTIYRGLIFVISDGAWVNAHEMSPAFTGFIRVVILGLPVQAWFAILTAAMVFVVI
HHHHHHHHHCCEEEEEECCCEEEHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ARTPLGRAFYAVGGNPHAAVYTGLNVGKTQFCAFVISGTLAGLVGYLWVARYSVAYVDIA
HCCCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
KGFELEVVAACVIGGIAIAGGAGTVMGAILGAIFLGIIKNALPVVGISPFWQLAISGAAI
CCCCHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEE
VIAVAFNARAGRAKGRIILKKAEAV
EEEEEECCCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MMRILKSREVLLVGVILALTALIASRFPAFIAPANLVNVFTDTSPLIILAIGQAIVILTR
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCEEEEEHHHHHHHHHH
CIDLSVASNLALTGMVCAMLNVAYPGLPVPVILVIAMGLGAILGAFNGILVWKLSIPPIV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
VTLGTLTIYRGLIFVISDGAWVNAHEMSPAFTGFIRVVILGLPVQAWFAILTAAMVFVVI
HHHHHHHHHCCEEEEEECCCEEEHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ARTPLGRAFYAVGGNPHAAVYTGLNVGKTQFCAFVISGTLAGLVGYLWVARYSVAYVDIA
HCCCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
KGFELEVVAACVIGGIAIAGGAGTVMGAILGAIFLGIIKNALPVVGISPFWQLAISGAAI
CCCCHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEE
VIAVAFNARAGRAKGRIILKKAEAV
EEEEEECCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]