| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is yesP [H]
Identifier: 89055078
GI number: 89055078
Start: 2596487
End: 2597431
Strand: Reverse
Name: yesP [H]
Synonym: Jann_2587
Alternate gene names: 89055078
Gene position: 2597431-2596487 (Counterclockwise)
Preceding gene: 89055079
Following gene: 89055077
Centisome position: 60.15
GC content: 60.53
Gene sequence:
>945_bases ATGGCGAGCACCTCTGCCCCCGACACATCTGACGCAGTGCACCGCCCCGCCGCCGCCCCGGCAGACGGTCTGAGCATCAT GCAAAAGCGGACGCTTTGGGCCTGGGCGTTTCTTGCGGTCCCGGTCCTCTTCTACGTCGTCATTCGCTTCTACCCGACCG GCAACGCCATGGTTCTGTCGTTTCAGGAATGGAACCTTCTGGGGGACCGCACCTGGGCGGGCCTCGACAATTACCGGGTG CTGTTTTCCGATCCTGTTTTCTGGCAGGTCTTCCGCAACACCTTTGTTTACTTGCTTCTGGGCACGCCCGTCAGCCTCGT GATCGCCTTCGTGATCGCCTATCATCTCGATCAGGTCCGGTTCATGCACGGCACGATCCGGGCGCTCTATTTCGTGCCCT TCATGACGTCGGCTGTGGCGATGGCCTGGGTCTGGCGCTGGTTCTATCAGGACGTGCCGATTGGCCTGTTCAACAACTGG CTGGCGACGTTCGGCATCCCGCAGATCGACTTCCTGGACAGCACGACCAATGCGCTGCCCTCCATCCTCGCGCCTGCGAT CTGGGCTGGTTTGGGCTTTCAGATCATCATCTTCATGGCGGGTTTGCGGGCCATCCCACGCACCTTCTATGAGGCTGCAG AGATCGACGGCGTCTCCACCTGGACGGTGCTGTGGGAAATCACCCTGCCGCTTCTGCGGCCCACCATCGTGTTCGTCGTG GTCCTGTCGTCCATCGGCTTCCTGCGCATTTTCGACCATGTGTTCAACATGACGTCGGCCAACCCGGGCGGGCCGCTGAA CTCCACCAAACCGCTGGTGTTGATGATCTACCAGACCGCATTCGACAGCTTCGACATGGGCTATGCCGCGGCCCAAACGG TTGTGTTGTTCGTGATCCTGCTGATCGTGAGCCTGATCCAACTGCGCCTTCTGAGGGACCGTTGA
Upstream 100 bases:
>100_bases AACGAATACTACAGCGACTGAGACCTCTCCAGTTGCACCTGGCCCCGGGCGATCCCTGCGTCCGGGGCCTCTTTCATCCT TTTGACCGAAGGCCCCGCCC
Downstream 100 bases:
>100_bases GCCATGACAACAGTTGACGACCTCTCGGTTCGCGCCTCGTCCGACACGCTTCTGAAAGCGCCGGGACCCGCGCGCAAACG CAATTTCGCGCAGTTTATTA
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MASTSAPDTSDAVHRPAAAPADGLSIMQKRTLWAWAFLAVPVLFYVVIRFYPTGNAMVLSFQEWNLLGDRTWAGLDNYRV LFSDPVFWQVFRNTFVYLLLGTPVSLVIAFVIAYHLDQVRFMHGTIRALYFVPFMTSAVAMAWVWRWFYQDVPIGLFNNW LATFGIPQIDFLDSTTNALPSILAPAIWAGLGFQIIIFMAGLRAIPRTFYEAAEIDGVSTWTVLWEITLPLLRPTIVFVV VLSSIGFLRIFDHVFNMTSANPGGPLNSTKPLVLMIYQTAFDSFDMGYAAAQTVVLFVILLIVSLIQLRLLRDR
Sequences:
>Translated_314_residues MASTSAPDTSDAVHRPAAAPADGLSIMQKRTLWAWAFLAVPVLFYVVIRFYPTGNAMVLSFQEWNLLGDRTWAGLDNYRV LFSDPVFWQVFRNTFVYLLLGTPVSLVIAFVIAYHLDQVRFMHGTIRALYFVPFMTSAVAMAWVWRWFYQDVPIGLFNNW LATFGIPQIDFLDSTTNALPSILAPAIWAGLGFQIIIFMAGLRAIPRTFYEAAEIDGVSTWTVLWEITLPLLRPTIVFVV VLSSIGFLRIFDHVFNMTSANPGGPLNSTKPLVLMIYQTAFDSFDMGYAAAQTVVLFVILLIVSLIQLRLLRDR >Mature_313_residues ASTSAPDTSDAVHRPAAAPADGLSIMQKRTLWAWAFLAVPVLFYVVIRFYPTGNAMVLSFQEWNLLGDRTWAGLDNYRVL FSDPVFWQVFRNTFVYLLLGTPVSLVIAFVIAYHLDQVRFMHGTIRALYFVPFMTSAVAMAWVWRWFYQDVPIGLFNNWL ATFGIPQIDFLDSTTNALPSILAPAIWAGLGFQIIIFMAGLRAIPRTFYEAAEIDGVSTWTVLWEITLPLLRPTIVFVVV LSSIGFLRIFDHVFNMTSANPGGPLNSTKPLVLMIYQTAFDSFDMGYAAAQTVVLFVILLIVSLIQLRLLRDR
Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1789861, Length=291, Percent_Identity=28.1786941580756, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1787570, Length=251, Percent_Identity=27.8884462151394, Blast_Score=94, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 35408; Mature: 35277
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASTSAPDTSDAVHRPAAAPADGLSIMQKRTLWAWAFLAVPVLFYVVIRFYPTGNAMVLS CCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE FQEWNLLGDRTWAGLDNYRVLFSDPVFWQVFRNTFVYLLLGTPVSLVIAFVIAYHLDQVR EHHCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHEEHEECCCHHHHHHHHHHHHHHHHH FMHGTIRALYFVPFMTSAVAMAWVWRWFYQDVPIGLFNNWLATFGIPQIDFLDSTTNALP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEECCCCHHHHHH SILAPAIWAGLGFQIIIFMAGLRAIPRTFYEAAEIDGVSTWTVLWEITLPLLRPTIVFVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH VLSSIGFLRIFDHVFNMTSANPGGPLNSTKPLVLMIYQTAFDSFDMGYAAAQTVVLFVIL HHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHH LIVSLIQLRLLRDR HHHHHHHHHHHHCC >Mature Secondary Structure ASTSAPDTSDAVHRPAAAPADGLSIMQKRTLWAWAFLAVPVLFYVVIRFYPTGNAMVLS CCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE FQEWNLLGDRTWAGLDNYRVLFSDPVFWQVFRNTFVYLLLGTPVSLVIAFVIAYHLDQVR EHHCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHEEHEECCCHHHHHHHHHHHHHHHHH FMHGTIRALYFVPFMTSAVAMAWVWRWFYQDVPIGLFNNWLATFGIPQIDFLDSTTNALP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEECCCCHHHHHH SILAPAIWAGLGFQIIIFMAGLRAIPRTFYEAAEIDGVSTWTVLWEITLPLLRPTIVFVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH VLSSIGFLRIFDHVFNMTSANPGGPLNSTKPLVLMIYQTAFDSFDMGYAAAQTVVLFVIL HHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHH LIVSLIQLRLLRDR HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]