Click here to switch to the map view.

The map label for this gene is araQ [H]

Identifier: 89055077

GI number: 89055077

Start: 2595599

End: 2596483

Strand: Reverse

Name: araQ [H]

Synonym: Jann_2586

Alternate gene names: 89055077

Gene position: 2596483-2595599 (Counterclockwise)

Preceding gene: 89055078

Following gene: 89055076

Centisome position: 60.13

GC content: 57.18

Gene sequence:

>885_bases
ATGACAACAGTTGACGACCTCTCGGTTCGCGCCTCGTCCGACACGCTTCTGAAAGCGCCGGGACCCGCGCGCAAACGCAA
TTTCGCGCAGTTTATTAGGTGGGCGCTGCTATTCGGGGGTGGCCTGCTGATGGTCATGCCACTGGCCTACATGATCTCTA
CCTCGATGAAGTGGCCGTGGGAGGTCTATAATATCGGCCTGATCCCGGAAGAGCCGACGCTGGAAAATTATACTTACGTG
CTGGAGGACGGGCGCTTTTTCGGTTGGTTCATCAACTCTTTGATCATTGCTGCGATCACGACGGTGTCGTCGCTCTTTTT
CGACAGCCTCGTGGGCTACACGCTTTGCAAATTCCGCTTTCGGGGTCGCTACATCATCTTCATTGCGATCCTGTCGACCC
TGATGATCCCCACGGAAATGCTGGTGATCCCGTGGTATATGATGAGCCAATCGCTTGGCTGGCTGGACAGCTACTGGGGC
ATCATGTTCCCCGGCCTGATGACGGCTTTCGGCGTCTTCCTGATGAAACAATTCTTTGAGACCGTGCCCGATGACTTTCT
GGAGGCCGCGCGGATCGACGGGTTGAACGAGTTCCAGATCTGGTGGCAGGTGGCGATGCCGATGGTCAAACCGGCCCTTG
CGGCTTTGGCGATCTTCATCTTTTTGGGCAATTGGACCGCGTTCCTCTGGCCGCTGATCGTAACGACGGATCCGTCGCTC
TATACCTTGCCGGTGGGCCTGTCGTCTTACGGGGACGAGGCGGACGTCGCATGGGAGTTGATCATGACCGGGGCGGCAAT
CTCGACCCTGCCGACGCTGATCTTTTTCCTGATCTTCCAGCGTTTCATCATCCGGGGCGTCGTGATGGCGGGCCTGAAGG
GATGA

Upstream 100 bases:

>100_bases
CTTCGACATGGGCTATGCCGCGGCCCAAACGGTTGTGTTGTTCGTGATCCTGCTGATCGTGAGCCTGATCCAACTGCGCC
TTCTGAGGGACCGTTGAGCC

Downstream 100 bases:

>100_bases
GCGCCCTTGTCACCGGCGCACGGCTGGACCACGTGCACCTTTGTGTGGCCGACCGGGCGGCCTCCGTTCAATGGTACGCC
CGGGTGCTCGACCTCCATCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTTVDDLSVRASSDTLLKAPGPARKRNFAQFIRWALLFGGGLLMVMPLAYMISTSMKWPWEVYNIGLIPEEPTLENYTYV
LEDGRFFGWFINSLIIAAITTVSSLFFDSLVGYTLCKFRFRGRYIIFIAILSTLMIPTEMLVIPWYMMSQSLGWLDSYWG
IMFPGLMTAFGVFLMKQFFETVPDDFLEAARIDGLNEFQIWWQVAMPMVKPALAALAIFIFLGNWTAFLWPLIVTTDPSL
YTLPVGLSSYGDEADVAWELIMTGAAISTLPTLIFFLIFQRFIIRGVVMAGLKG

Sequences:

>Translated_294_residues
MTTVDDLSVRASSDTLLKAPGPARKRNFAQFIRWALLFGGGLLMVMPLAYMISTSMKWPWEVYNIGLIPEEPTLENYTYV
LEDGRFFGWFINSLIIAAITTVSSLFFDSLVGYTLCKFRFRGRYIIFIAILSTLMIPTEMLVIPWYMMSQSLGWLDSYWG
IMFPGLMTAFGVFLMKQFFETVPDDFLEAARIDGLNEFQIWWQVAMPMVKPALAALAIFIFLGNWTAFLWPLIVTTDPSL
YTLPVGLSSYGDEADVAWELIMTGAAISTLPTLIFFLIFQRFIIRGVVMAGLKG
>Mature_293_residues
TTVDDLSVRASSDTLLKAPGPARKRNFAQFIRWALLFGGGLLMVMPLAYMISTSMKWPWEVYNIGLIPEEPTLENYTYVL
EDGRFFGWFINSLIIAAITTVSSLFFDSLVGYTLCKFRFRGRYIIFIAILSTLMIPTEMLVIPWYMMSQSLGWLDSYWGI
MFPGLMTAFGVFLMKQFFETVPDDFLEAARIDGLNEFQIWWQVAMPMVKPALAALAIFIFLGNWTAFLWPLIVTTDPSLY
TLPVGLSSYGDEADVAWELIMTGAAISTLPTLIFFLIFQRFIIRGVVMAGLKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=230, Percent_Identity=32.6086956521739, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787571, Length=259, Percent_Identity=29.3436293436293, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790464, Length=248, Percent_Identity=27.4193548387097, Blast_Score=91, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33340; Mature: 33209

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTVDDLSVRASSDTLLKAPGPARKRNFAQFIRWALLFGGGLLMVMPLAYMISTSMKWPW
CCCCCCCEEECCCCCEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
EVYNIGLIPEEPTLENYTYVLEDGRFFGWFINSLIIAAITTVSSLFFDSLVGYTLCKFRF
EEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGRYIIFIAILSTLMIPTEMLVIPWYMMSQSLGWLDSYWGIMFPGLMTAFGVFLMKQFFE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVPDDFLEAARIDGLNEFQIWWQVAMPMVKPALAALAIFIFLGNWTAFLWPLIVTTDPSL
HCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHEECCCCE
YTLPVGLSSYGDEADVAWELIMTGAAISTLPTLIFFLIFQRFIIRGVVMAGLKG
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TTVDDLSVRASSDTLLKAPGPARKRNFAQFIRWALLFGGGLLMVMPLAYMISTSMKWPW
CCCCCCEEECCCCCEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
EVYNIGLIPEEPTLENYTYVLEDGRFFGWFINSLIIAAITTVSSLFFDSLVGYTLCKFRF
EEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGRYIIFIAILSTLMIPTEMLVIPWYMMSQSLGWLDSYWGIMFPGLMTAFGVFLMKQFFE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVPDDFLEAARIDGLNEFQIWWQVAMPMVKPALAALAIFIFLGNWTAFLWPLIVTTDPSL
HCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHEECCCCE
YTLPVGLSSYGDEADVAWELIMTGAAISTLPTLIFFLIFQRFIIRGVVMAGLKG
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]