| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89055071
Identifier: 89055071
GI number: 89055071
Start: 2590446
End: 2590733
Strand: Reverse
Name: 89055071
Synonym: Jann_2580
Alternate gene names: NA
Gene position: 2590733-2590446 (Counterclockwise)
Preceding gene: 89055073
Following gene: 89055070
Centisome position: 60.0
GC content: 61.46
Gene sequence:
>288_bases TTGACAGACCCGGAGAGACCAATGCTGATCCTGAAACCAAATTGCGAATGCTGTGATGTGGACCTGCCGCCCGAGAGTCT CGACGCGCGGAGTTGCACGTTTGAATGCACCTTCTGCGCCGATTGCACCGACACGCGCTTCGGGGGCATTTGCCCCAACT GCGGCGGAGAGCTGCTGCGCCGTCCCATTCGCCCCGCCGCCCTTCTGGCCAAATACCCGGCTTCAACAGAGCGGTTCATC AAAGCTCACCTCGCCTGCGCGGATCTGCAGATGGAGGCCGTGCCATGA
Upstream 100 bases:
>100_bases AGCACGCAGTTGGGGTACACGACAAACAGAACCGGCTTGGCAGAAAAAGAGGTCATATTGTCCTTTATGCCAATCGCAGG GAGCGTAAGCTAGGGCAAAT
Downstream 100 bases:
>100_bases AAACGCTCGCCGCGCTGGTCTTTCCGGGCTTTGAAACGCTCGACTATTTTGGCCCGATGGAGATGTTGGGTGGCTCGGGA GAGCAGATTGAGATCATTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 95; Mature: 94
Protein sequence:
>95_residues MTDPERPMLILKPNCECCDVDLPPESLDARSCTFECTFCADCTDTRFGGICPNCGGELLRRPIRPAALLAKYPASTERFI KAHLACADLQMEAVP
Sequences:
>Translated_95_residues MTDPERPMLILKPNCECCDVDLPPESLDARSCTFECTFCADCTDTRFGGICPNCGGELLRRPIRPAALLAKYPASTERFI KAHLACADLQMEAVP >Mature_94_residues TDPERPMLILKPNCECCDVDLPPESLDARSCTFECTFCADCTDTRFGGICPNCGGELLRRPIRPAALLAKYPASTERFIK AHLACADLQMEAVP
Specific function: Unknown
COG id: COG3813
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010696 - InterPro: IPR013083 [H]
Pfam domain/function: PF06906 DUF1272 [H]
EC number: NA
Molecular weight: Translated: 10436; Mature: 10305
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
10.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 13.7 %Cys+Met (Translated Protein) 10.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 12.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDPERPMLILKPNCECCDVDLPPESLDARSCTFECTFCADCTDTRFGGICPNCGGELLR CCCCCCCEEEECCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHH RPIRPAALLAKYPASTERFIKAHLACADLQMEAVP CCCCCHHHHHHCCCCHHHHHHHHHHHCCEEEECCC >Mature Secondary Structure TDPERPMLILKPNCECCDVDLPPESLDARSCTFECTFCADCTDTRFGGICPNCGGELLR CCCCCCEEEECCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHH RPIRPAALLAKYPASTERFIKAHLACADLQMEAVP CCCCCHHHHHHCCCCHHHHHHHHHHHCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8121412; 11481430 [H]