Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89055039

Identifier: 89055039

GI number: 89055039

Start: 2551559

End: 2551807

Strand: Direct

Name: 89055039

Synonym: Jann_2548

Alternate gene names: NA

Gene position: 2551559-2551807 (Clockwise)

Preceding gene: 89055038

Following gene: 89055041

Centisome position: 59.09

GC content: 61.45

Gene sequence:

>249_bases
ATGGATGATCTGTTTTCCCTCGCCGCACCCGTGCCCGCTACTATCGAGGCCGAACGCTGGATTGAACACCTGTTCTCAGC
CCGGGCGGCGATCAACGGCCATGTCGTCCGCCGCAAGGCCCGTGATGTGGAACGGATCGTCGGCTGGCCCCGTTTTCGTC
AGGAATTACGGCGCCGTGGCTATTCTGCCGTGCGCAATGGCGCCCAGGTCGTCGTCTTTTGCAACGCTCTTCCGGTGCAC
AAACTCTGA

Upstream 100 bases:

>100_bases
GCGGCGGCGGCCCGACCCGCGAACGTCGCGGCCGCAGACGCGTCCGCAATTGATCCGTTTGTTTACGTGCCTTTAACCAA
TCTCTGGTGCTCTGCATGGT

Downstream 100 bases:

>100_bases
CGCCGGGGCCCAGACTTTTGCAAAAGTCTGGGCAAAGCCTTGCAAGGCTTTGCAGCACGCCCTTGCAAGGGCGTGGAGAG
AGTTTTGCAAAACTCTCTAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MDDLFSLAAPVPATIEAERWIEHLFSARAAINGHVVRRKARDVERIVGWPRFRQELRRRGYSAVRNGAQVVVFCNALPVH
KL

Sequences:

>Translated_82_residues
MDDLFSLAAPVPATIEAERWIEHLFSARAAINGHVVRRKARDVERIVGWPRFRQELRRRGYSAVRNGAQVVVFCNALPVH
KL
>Mature_82_residues
MDDLFSLAAPVPATIEAERWIEHLFSARAAINGHVVRRKARDVERIVGWPRFRQELRRRGYSAVRNGAQVVVFCNALPVH
KL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9392; Mature: 9392

Theoretical pI: Translated: 11.59; Mature: 11.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDLFSLAAPVPATIEAERWIEHLFSARAAINGHVVRRKARDVERIVGWPRFRQELRRRG
CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
YSAVRNGAQVVVFCNALPVHKL
HHHHCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MDDLFSLAAPVPATIEAERWIEHLFSARAAINGHVVRRKARDVERIVGWPRFRQELRRRG
CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
YSAVRNGAQVVVFCNALPVHKL
HHHHCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA