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The map label for this gene is araC [C]

Identifier: 89054953

GI number: 89054953

Start: 2455745

End: 2456551

Strand: Direct

Name: araC [C]

Synonym: Jann_2462

Alternate gene names: 89054953

Gene position: 2455745-2456551 (Clockwise)

Preceding gene: 89054952

Following gene: 89054954

Centisome position: 56.87

GC content: 66.54

Gene sequence:

>807_bases
ATGTTCGATACGTCCCGCAAACCGATCGCCCATGCCGTGGCCTCCCTCGGCAAACTGCGTATGCAGGGCGCGTGGCGGGT
GGAACTGCTCCACGCCTCCCCGCGCAACAGGCTGTACTGGATCACCCGGGGGCAAGGCCGGGTGACGGTCAATTGCGTGA
CCCGGGGCTATGGGCCCAATACCGCCGTCTTCGTGCCGGCCCGCGTGCCCATGGCGTTGGAACTGGCCGCACAAACGCAG
GGGCTGGAGCTGTGCCTGCCCCCCGATGATACACTAAAACTGCCCGTGGATCCGTTCCATATGCGCGTCTCTCACATCGA
AAGCCAGGCAAGCCTGACCTCCCATATCGAGAAGATCGAGGGGGAGCTTGTGGCCCAGGCTCCGGCGATGGATCAGGCGC
TGACGGCCTATTCGCTGCTGGTCTCCACCTGGATGACGCGCGAACTGGCGCGCCAGGAAGGGGCGATCGGGCGCGAGGGC
GCGCACCGGCTGGCCGAAATGTTCGCGCAGCGGATGGAGGCGCAATTCCGCACCGGCTCCGGCGTAGCCGATTACGCCAG
GCAATTGCAGGTCACGCCCACACATCTCAGCCGGGTGTGCCGTGAGGCGTCGGGCCGCCCGGCCCTGGCCCTCCTCAATG
AGCGGATCATGTATGAAGCGCGCCGCCTGCTTCTGGAAACGGATCTGCCCGCCCGCGAAATCGCGCAACAGCTTGGGTTC
TCGTCGGCGGCCTATTTCACGCGCGCCTTCAGCCAGGCCGTGGGCCGGACGCCGTCGGACTTTCGTAAGCCCGCGCGCCG
GAGCTGA

Upstream 100 bases:

>100_bases
AAAAAAGACGCAGGGGGGCAGCGCCCCCTTTGCGACATCGAAAACAAGCGCCGCCCCATTTCCGCTTGCACCCCCTGACC
CCACGTCTACCCTAGCGTCC

Downstream 100 bases:

>100_bases
CGCAGCGGCACCCTTACACCTGTATACAGCTACCCGGTTGCAATGCGGGTCAATGTCGGTTCTGTTAGGCAAAGATGTCG
CTAATGGACCATTCAAGACG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator PobR; Transcriptional Regulatory Protein; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Helix-Turn-Helix Domain-Containing Protein; Regulator Of 4HPA-Hydroxylase Operon; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Arac Family; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC-Family Regulatory Protein; AraC-Family Transcriptional Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MFDTSRKPIAHAVASLGKLRMQGAWRVELLHASPRNRLYWITRGQGRVTVNCVTRGYGPNTAVFVPARVPMALELAAQTQ
GLELCLPPDDTLKLPVDPFHMRVSHIESQASLTSHIEKIEGELVAQAPAMDQALTAYSLLVSTWMTRELARQEGAIGREG
AHRLAEMFAQRMEAQFRTGSGVADYARQLQVTPTHLSRVCREASGRPALALLNERIMYEARRLLLETDLPAREIAQQLGF
SSAAYFTRAFSQAVGRTPSDFRKPARRS

Sequences:

>Translated_268_residues
MFDTSRKPIAHAVASLGKLRMQGAWRVELLHASPRNRLYWITRGQGRVTVNCVTRGYGPNTAVFVPARVPMALELAAQTQ
GLELCLPPDDTLKLPVDPFHMRVSHIESQASLTSHIEKIEGELVAQAPAMDQALTAYSLLVSTWMTRELARQEGAIGREG
AHRLAEMFAQRMEAQFRTGSGVADYARQLQVTPTHLSRVCREASGRPALALLNERIMYEARRLLLETDLPAREIAQQLGF
SSAAYFTRAFSQAVGRTPSDFRKPARRS
>Mature_268_residues
MFDTSRKPIAHAVASLGKLRMQGAWRVELLHASPRNRLYWITRGQGRVTVNCVTRGYGPNTAVFVPARVPMALELAAQTQ
GLELCLPPDDTLKLPVDPFHMRVSHIESQASLTSHIEKIEGELVAQAPAMDQALTAYSLLVSTWMTRELARQEGAIGREG
AHRLAEMFAQRMEAQFRTGSGVADYARQLQVTPTHLSRVCREASGRPALALLNERIMYEARRLLLETDLPAREIAQQLGF
SSAAYFTRAFSQAVGRTPSDFRKPARRS

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29825; Mature: 29825

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDTSRKPIAHAVASLGKLRMQGAWRVELLHASPRNRLYWITRGQGRVTVNCVTRGYGPN
CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCEEEEEEEEECCCCC
TAVFVPARVPMALELAAQTQGLELCLPPDDTLKLPVDPFHMRVSHIESQASLTSHIEKIE
CEEEECCCCCHHHHHHHCCCCCEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHH
GELVAQAPAMDQALTAYSLLVSTWMTRELARQEGAIGREGAHRLAEMFAQRMEAQFRTGS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
GVADYARQLQVTPTHLSRVCREASGRPALALLNERIMYEARRLLLETDLPAREIAQQLGF
CHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
SSAAYFTRAFSQAVGRTPSDFRKPARRS
CHHHHHHHHHHHHHCCCCHHHHCCCCCC
>Mature Secondary Structure
MFDTSRKPIAHAVASLGKLRMQGAWRVELLHASPRNRLYWITRGQGRVTVNCVTRGYGPN
CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCEEEEEEEEECCCCC
TAVFVPARVPMALELAAQTQGLELCLPPDDTLKLPVDPFHMRVSHIESQASLTSHIEKIE
CEEEECCCCCHHHHHHHCCCCCEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHH
GELVAQAPAMDQALTAYSLLVSTWMTRELARQEGAIGREGAHRLAEMFAQRMEAQFRTGS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
GVADYARQLQVTPTHLSRVCREASGRPALALLNERIMYEARRLLLETDLPAREIAQQLGF
CHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
SSAAYFTRAFSQAVGRTPSDFRKPARRS
CHHHHHHHHHHHHHCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA