| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is icd [H]
Identifier: 89054862
GI number: 89054862
Start: 2375278
End: 2377473
Strand: Direct
Name: icd [H]
Synonym: Jann_2371
Alternate gene names: 89054862
Gene position: 2375278-2377473 (Clockwise)
Preceding gene: 89054859
Following gene: 89054863
Centisome position: 55.01
GC content: 62.25
Gene sequence:
>2196_bases ATGACGACACCCGACATCATCTATACCAAAGTTGACGAGGCGCCGGAGCTGGCGTCGGCCTCCCTTTTGCCGATCATCCA ACGGTTTGCGAAGGCCGCAGGGATCAGCGTGGGCACCCGGGATATCAGTCTTGCGGGTCGGATCCTGGCCACGTTCCCCG AGAACCTGACAGACGATCAGCGCATATCCGATGATCTGGCCGCGCTAGGAGAGTTGGTGAAAACCGCCGAGGCCAACGTG ATCAAGCTGCCCAACATCTCGGCCTCCGTGCCGCAGCTGGTCGCCGCCGTGACGGAGCTTCAGGGCAAGGGTTTCGCGAT CCCCGATTACCCGGAAACCCCTGAAACGGATGCAGAAAAGGCTATCCGCGCGCGCTATGATGCGATCAAAGGCTCGGCCG TGAACCCGGTGCTGCGCGAAGGCAATTCGGACCGCCGCGCGGCCGCCGCCGTCAAGACCTACGCCCAGAACAATCCGCAC CGCATGGGGGCCTGGAGCGCAGACAGCAAGACCCGTGTGGCGTCGATGTCGGGCGGTGATTTCTTCTCCAACGAGACCTC GGTGACGCTGGCCGAGGATACCCATGTCCAGATCGTGCTGGAGACCGCTGGCGGTGACAAGATCCTGAAAGACGGCCTGT CCTACCCCGCAGGTACCGTGCTGGACGCGACCTTCATGAGCGCCGCAGCCCTTGGTGCCTTCCTGGCCGACGAGATCGAG AAAACCAAGGCCGAGGGCGTGCTGTTCTCTCTGCATATGAAGGCCACGATGATGAAGGTGTCGGACCCGATCATCTTTGG CCACGCGGTCAAGGCCTGGCTCGCGCCCGTTTTCGATCAGTTCAGCGAAGAGTTGAAAGCCGCAGGCGTAAACCCCAATT CCGGCATGGCCGATCTTCTGGCCCGGGTCGCCGACCACCCCGAGATCCTCGCCGCGATTGAAGAGAACCGGGCCAACCGC CCGCCGATGTATATGGTGAACTCTGACAAGGGCATCACCAATCTGCACGTGTCATCCGATGTGATCATTGACGCCTCCAT GCCTGCGTTGATCCGGGCTGGTGGCAAGGGCTGGGGGCCGGATGGCGAAGAGCATGACGCCGTCTGCGTCATCCCCGACA ATTCCTATGCGCCGGTCTATGATGAGGCGATCACCTTCTTCAAAGGCAACGGCGCGCTGGATCCCGCCACCGCAGGCACC GTGCAGAACCTGGGTCTGATGGCGCAAAAGGCGGAGGAATACGGCTCCCACCCCACAACGTTTGAGATTGCGGAGGCGGG CATTGTCAAAATGATCGCGGGCGATGGCACGGTGCTGCATTCCCATGAGGTGCAGGCGGGCGATATCTGGCGCTCAGCCT CCGCGCGCAAGGCCCCGATTGAGGATTGGGTGCAGCTGGCCATTGCGCGCCAGAAGGCCACCGGCTACCGCGCGATCTTC TGGCTCGACGCCGACCGGGCCCATGATGCGGAGTTAATCTCATACGTGAAGCCCATCCTGCAAGACTCTGGTGTTGAAGA TAAATTTGAGATCATGACCCCGCGTCAGGCGACCCGCGCGTCGTTGGAGACAATCACCAAGGGCGAGAACACCATCGCCA TCACCGGCAACGTGCTGCGGGACTATCTGACGGATCTGTTCCCGATCCTGGAACTGGCAACCTCGGCCAAGATGCTGTCC ATCGTGAAGCTGATGCAGGGCGGCGGTTTGTTTGAAACCGGTGCCGGTGGATCGGCCCCGAAACACGTCCAGCAGTTGCA CTCCGAAGGGCATCTGCGGTGGGACAGCCTCGGTGAATTCTGCGCCCTGGGCGAGTCCCTCACCTTTCTGGCGGACGCAA AGGGCAACGCGAAGGCTCGCGTGTTGGGCGCGGCGGTTGATACCGCGACCCAAGGCATTCTGGATGACAACCGCTCTCCG GGGCGCAAGGTCGGCCAGCCGGACAACCGCGACAGCCATTACTGGTTCGCCCGCTACTGGGCCGAAGCGCTTGCCGCGCA GTCCGAGGACGCAGACATGGCCGCAGAGTTCGCGCCATTGGCACATGCATTGGCCGAGAATGAGGCCACGATCCTGGCGG AGCTGGATACCGGCGAAGGGTCGGAGGCCGACACTGGCGGATACTACCTAAACGATCCCGCGAAGCTGGAGGCCGTCATG CGGCCAAGTGCGACGCTGAACGGGATTATCGGGTAG
Upstream 100 bases:
>100_bases CGACAGTGCGTCGCCAGTATGCAACGGTATACCTCTTTGCCTTCCCGCCCCGATCCGCTACACGGACCCCAACAGACACG ACGCGCAGAGGGCAAATCCC
Downstream 100 bases:
>100_bases CGCGTCAAGCGACGACAATCTGGCACCCCGCGCGGGGTCAAGGCCATTAAGCCGCCGCGCATCGTCGGGCCGCCCCCCGG TCCGACGATTTGGCGGACCT
Product: isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 731; Mature: 730
Protein sequence:
>731_residues MTTPDIIYTKVDEAPELASASLLPIIQRFAKAAGISVGTRDISLAGRILATFPENLTDDQRISDDLAALGELVKTAEANV IKLPNISASVPQLVAAVTELQGKGFAIPDYPETPETDAEKAIRARYDAIKGSAVNPVLREGNSDRRAAAAVKTYAQNNPH RMGAWSADSKTRVASMSGGDFFSNETSVTLAEDTHVQIVLETAGGDKILKDGLSYPAGTVLDATFMSAAALGAFLADEIE KTKAEGVLFSLHMKATMMKVSDPIIFGHAVKAWLAPVFDQFSEELKAAGVNPNSGMADLLARVADHPEILAAIEENRANR PPMYMVNSDKGITNLHVSSDVIIDASMPALIRAGGKGWGPDGEEHDAVCVIPDNSYAPVYDEAITFFKGNGALDPATAGT VQNLGLMAQKAEEYGSHPTTFEIAEAGIVKMIAGDGTVLHSHEVQAGDIWRSASARKAPIEDWVQLAIARQKATGYRAIF WLDADRAHDAELISYVKPILQDSGVEDKFEIMTPRQATRASLETITKGENTIAITGNVLRDYLTDLFPILELATSAKMLS IVKLMQGGGLFETGAGGSAPKHVQQLHSEGHLRWDSLGEFCALGESLTFLADAKGNAKARVLGAAVDTATQGILDDNRSP GRKVGQPDNRDSHYWFARYWAEALAAQSEDADMAAEFAPLAHALAENEATILAELDTGEGSEADTGGYYLNDPAKLEAVM RPSATLNGIIG
Sequences:
>Translated_731_residues MTTPDIIYTKVDEAPELASASLLPIIQRFAKAAGISVGTRDISLAGRILATFPENLTDDQRISDDLAALGELVKTAEANV IKLPNISASVPQLVAAVTELQGKGFAIPDYPETPETDAEKAIRARYDAIKGSAVNPVLREGNSDRRAAAAVKTYAQNNPH RMGAWSADSKTRVASMSGGDFFSNETSVTLAEDTHVQIVLETAGGDKILKDGLSYPAGTVLDATFMSAAALGAFLADEIE KTKAEGVLFSLHMKATMMKVSDPIIFGHAVKAWLAPVFDQFSEELKAAGVNPNSGMADLLARVADHPEILAAIEENRANR PPMYMVNSDKGITNLHVSSDVIIDASMPALIRAGGKGWGPDGEEHDAVCVIPDNSYAPVYDEAITFFKGNGALDPATAGT VQNLGLMAQKAEEYGSHPTTFEIAEAGIVKMIAGDGTVLHSHEVQAGDIWRSASARKAPIEDWVQLAIARQKATGYRAIF WLDADRAHDAELISYVKPILQDSGVEDKFEIMTPRQATRASLETITKGENTIAITGNVLRDYLTDLFPILELATSAKMLS IVKLMQGGGLFETGAGGSAPKHVQQLHSEGHLRWDSLGEFCALGESLTFLADAKGNAKARVLGAAVDTATQGILDDNRSP GRKVGQPDNRDSHYWFARYWAEALAAQSEDADMAAEFAPLAHALAENEATILAELDTGEGSEADTGGYYLNDPAKLEAVM RPSATLNGIIG >Mature_730_residues TTPDIIYTKVDEAPELASASLLPIIQRFAKAAGISVGTRDISLAGRILATFPENLTDDQRISDDLAALGELVKTAEANVI KLPNISASVPQLVAAVTELQGKGFAIPDYPETPETDAEKAIRARYDAIKGSAVNPVLREGNSDRRAAAAVKTYAQNNPHR MGAWSADSKTRVASMSGGDFFSNETSVTLAEDTHVQIVLETAGGDKILKDGLSYPAGTVLDATFMSAAALGAFLADEIEK TKAEGVLFSLHMKATMMKVSDPIIFGHAVKAWLAPVFDQFSEELKAAGVNPNSGMADLLARVADHPEILAAIEENRANRP PMYMVNSDKGITNLHVSSDVIIDASMPALIRAGGKGWGPDGEEHDAVCVIPDNSYAPVYDEAITFFKGNGALDPATAGTV QNLGLMAQKAEEYGSHPTTFEIAEAGIVKMIAGDGTVLHSHEVQAGDIWRSASARKAPIEDWVQLAIARQKATGYRAIFW LDADRAHDAELISYVKPILQDSGVEDKFEIMTPRQATRASLETITKGENTIAITGNVLRDYLTDLFPILELATSAKMLSI VKLMQGGGLFETGAGGSAPKHVQQLHSEGHLRWDSLGEFCALGESLTFLADAKGNAKARVLGAAVDTATQGILDDNRSPG RKVGQPDNRDSHYWFARYWAEALAAQSEDADMAAEFAPLAHALAENEATILAELDTGEGSEADTGGYYLNDPAKLEAVMR PSATLNGIIG
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 77943; Mature: 77812
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPDIIYTKVDEAPELASASLLPIIQRFAKAAGISVGTRDISLAGRILATFPENLTDDQ CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCH RISDDLAALGELVKTAEANVIKLPNISASVPQLVAAVTELQGKGFAIPDYPETPETDAEK HHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH AIRARYDAIKGSAVNPVLREGNSDRRAAAAVKTYAQNNPHRMGAWSADSKTRVASMSGGD HHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCC FFSNETSVTLAEDTHVQIVLETAGGDKILKDGLSYPAGTVLDATFMSAAALGAFLADEIE CCCCCCEEEEECCCEEEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH KTKAEGVLFSLHMKATMMKVSDPIIFGHAVKAWLAPVFDQFSEELKAAGVNPNSGMADLL HHHHCCEEEEEEHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH ARVADHPEILAAIEENRANRPPMYMVNSDKGITNLHVSSDVIIDASMPALIRAGGKGWGP HHHCCCHHHHHHHHHCCCCCCCEEEEECCCCCEEEEECCCEEEECCCCHHHHCCCCCCCC DGEEHDAVCVIPDNSYAPVYDEAITFFKGNGALDPATAGTVQNLGLMAQKAEEYGSHPTT CCCCCCEEEEEECCCCCCHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE FEIAEAGIVKMIAGDGTVLHSHEVQAGDIWRSASARKAPIEDWVQLAIARQKATGYRAIF EEECCCCEEEEEECCCEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEE WLDADRAHDAELISYVKPILQDSGVEDKFEIMTPRQATRASLETITKGENTIAITGNVLR EEECCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEHHHHH DYLTDLFPILELATSAKMLSIVKLMQGGGLFETGAGGSAPKHVQQLHSEGHLRWDSLGEF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCEEHHHHHHH CALGESLTFLADAKGNAKARVLGAAVDTATQGILDDNRSPGRKVGQPDNRDSHYWFARYW HHHCCCEEEEECCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH AEALAAQSEDADMAAEFAPLAHALAENEATILAELDTGEGSEADTGGYYLNDPAKLEAVM HHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEECCHHHHHHHH RPSATLNGIIG CCCCCCCCCCC >Mature Secondary Structure TTPDIIYTKVDEAPELASASLLPIIQRFAKAAGISVGTRDISLAGRILATFPENLTDDQ CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCH RISDDLAALGELVKTAEANVIKLPNISASVPQLVAAVTELQGKGFAIPDYPETPETDAEK HHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH AIRARYDAIKGSAVNPVLREGNSDRRAAAAVKTYAQNNPHRMGAWSADSKTRVASMSGGD HHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCC FFSNETSVTLAEDTHVQIVLETAGGDKILKDGLSYPAGTVLDATFMSAAALGAFLADEIE CCCCCCEEEEECCCEEEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH KTKAEGVLFSLHMKATMMKVSDPIIFGHAVKAWLAPVFDQFSEELKAAGVNPNSGMADLL HHHHCCEEEEEEHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH ARVADHPEILAAIEENRANRPPMYMVNSDKGITNLHVSSDVIIDASMPALIRAGGKGWGP HHHCCCHHHHHHHHHCCCCCCCEEEEECCCCCEEEEECCCEEEECCCCHHHHCCCCCCCC DGEEHDAVCVIPDNSYAPVYDEAITFFKGNGALDPATAGTVQNLGLMAQKAEEYGSHPTT CCCCCCEEEEEECCCCCCHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE FEIAEAGIVKMIAGDGTVLHSHEVQAGDIWRSASARKAPIEDWVQLAIARQKATGYRAIF EEECCCCEEEEEECCCEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEE WLDADRAHDAELISYVKPILQDSGVEDKFEIMTPRQATRASLETITKGENTIAITGNVLR EEECCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEHHHHH DYLTDLFPILELATSAKMLSIVKLMQGGGLFETGAGGSAPKHVQQLHSEGHLRWDSLGEF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCEEHHHHHHH CALGESLTFLADAKGNAKARVLGAAVDTATQGILDDNRSPGRKVGQPDNRDSHYWFARYW HHHCCCEEEEECCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH AEALAAQSEDADMAAEFAPLAHALAENEATILAELDTGEGSEADTGGYYLNDPAKLEAVM HHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEECCHHHHHHHH RPSATLNGIIG CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]