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The map label for this gene is ydcN [C]

Identifier: 89054805

GI number: 89054805

Start: 2318528

End: 2319154

Strand: Reverse

Name: ydcN [C]

Synonym: Jann_2314

Alternate gene names: 89054805

Gene position: 2319154-2318528 (Counterclockwise)

Preceding gene: 89054811

Following gene: 89054801

Centisome position: 53.71

GC content: 64.43

Gene sequence:

>627_bases
ATGAGCCACGCCCCCGATCAACCCAGCCTGATCCGCCTCGCGCGGGCCTCTGGCGAGGAGGCCGTCCCTGTGCCCGTGGA
CCTCGCGGCCCGGGTGCGCGAGCTGCGCAAGGCCCGATCCTGGACGTTGGAACAGGCGGCGGGCCAGGCGGGATTGGCGC
GATCCACCTTGTCGAAGATTGAGAACGGGCAGATGTCGCCCACCTATGATGCGTTGAAGAAACTGGCGAACGGCCTGGGG
ATTTCGGTGCCGCAGCTGTTCACGCCATCGGTGGCGCCGCAAGGCGGTGGACGGATGGTGACGACCAAACGCGGCGAGGG
GGCGGCCTATGCCACCACCACCTACGAGCACGAACTTTTGGCCGATCAACTGGTTCAGAAATCAATGCTGCCCTACCGCG
CCCGCATCCGGGCCCGGGCGGTTGAGGAGTTCGAGGGCTGGGTGCGCCATGAGGGGGAAGAATTCCTCTATGTCCTGACC
GGCGCGGTGCGGCTATTCACGGAATTCTATCAGCCAGTCGATATGGTTCGGGGCGACAGCGCCTATTACGACGCCGCGAT
GGGGCACAATGTGGTGTCGACATCCGATGACGACGCGACGATCCTTTGGGTCACATCCCTGACGTAG

Upstream 100 bases:

>100_bases
AGGTCGACAGGTTGAAGCGGGTGGGGCAGTCCATGGAAATGGCCTAAGAGAGCGCGGCGGAGGTTGCAAGGCGGGCAGGG
TGTGCGGTATCGCACGGTGC

Downstream 100 bases:

>100_bases
GGGTTCGGACCCTGTAGATGCGCCTTCGGCGTTGCGCCGCGCTTCGCGCGTCGCCTCGTGCCCTGCGGGCGCTCGGCCAG
GGCGCATCACGGACGACAAG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator HTH_3 Family; MerR Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator MerR Family; Helix-Turn-Helix Family; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Domain-Containing Protein; XRE Family-Like Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Helix-Turn-Helix Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcription Regulator Protein; Transcriptional Regulator Xre Family; Transcription Regulator; Cupin 2 Conserved Barrel Domain Protein; HTH_3family Transcriptional Regulator

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MSHAPDQPSLIRLARASGEEAVPVPVDLAARVRELRKARSWTLEQAAGQAGLARSTLSKIENGQMSPTYDALKKLANGLG
ISVPQLFTPSVAPQGGGRMVTTKRGEGAAYATTTYEHELLADQLVQKSMLPYRARIRARAVEEFEGWVRHEGEEFLYVLT
GAVRLFTEFYQPVDMVRGDSAYYDAAMGHNVVSTSDDDATILWVTSLT

Sequences:

>Translated_208_residues
MSHAPDQPSLIRLARASGEEAVPVPVDLAARVRELRKARSWTLEQAAGQAGLARSTLSKIENGQMSPTYDALKKLANGLG
ISVPQLFTPSVAPQGGGRMVTTKRGEGAAYATTTYEHELLADQLVQKSMLPYRARIRARAVEEFEGWVRHEGEEFLYVLT
GAVRLFTEFYQPVDMVRGDSAYYDAAMGHNVVSTSDDDATILWVTSLT
>Mature_207_residues
SHAPDQPSLIRLARASGEEAVPVPVDLAARVRELRKARSWTLEQAAGQAGLARSTLSKIENGQMSPTYDALKKLANGLGI
SVPQLFTPSVAPQGGGRMVTTKRGEGAAYATTTYEHELLADQLVQKSMLPYRARIRARAVEEFEGWVRHEGEEFLYVLTG
AVRLFTEFYQPVDMVRGDSAYYDAAMGHNVVSTSDDDATILWVTSLT

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22787; Mature: 22656

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHAPDQPSLIRLARASGEEAVPVPVDLAARVRELRKARSWTLEQAAGQAGLARSTLSKI
CCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
ENGQMSPTYDALKKLANGLGISVPQLFTPSVAPQGGGRMVTTKRGEGAAYATTTYEHELL
CCCCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCEEEEEECCCCCEEEECHHHHHHH
ADQLVQKSMLPYRARIRARAVEEFEGWVRHEGEEFLYVLTGAVRLFTEFYQPVDMVRGDS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
AYYDAAMGHNVVSTSDDDATILWVTSLT
HHHHHHHCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
SHAPDQPSLIRLARASGEEAVPVPVDLAARVRELRKARSWTLEQAAGQAGLARSTLSKI
CCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
ENGQMSPTYDALKKLANGLGISVPQLFTPSVAPQGGGRMVTTKRGEGAAYATTTYEHELL
CCCCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCEEEEEECCCCCEEEECHHHHHHH
ADQLVQKSMLPYRARIRARAVEEFEGWVRHEGEEFLYVLTGAVRLFTEFYQPVDMVRGDS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
AYYDAAMGHNVVSTSDDDATILWVTSLT
HHHHHHHCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA