| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is yejA [C]
Identifier: 89054801
GI number: 89054801
Start: 2313783
End: 2315594
Strand: Reverse
Name: yejA [C]
Synonym: Jann_2310
Alternate gene names: 89054801
Gene position: 2315594-2313783 (Counterclockwise)
Preceding gene: 89054805
Following gene: 89054797
Centisome position: 53.63
GC content: 63.52
Gene sequence:
>1812_bases ATGCCGACAAATTGTTTCTCAAAAGGGACCCTAGCCGTTGTGCTGAGCCTTGGACTTAGCATGAGCGCCCTGGCTGACCC ACAACATGGTGTGGCGATGTATGGCGAGCCGGCGCTGGGTCCGGACTTCTCGCACCTTCCCTATGCCAACCCCGATGCCC CCACAGGCGGGCGGATCGTGACCGGCGAAGTGGGTACATTCGACAGTCTGAACCCGCACATCCGGCAGGGATCCACGCCC TGGCAGTTGCGATTCCTGACCTACGAATCGCTCCTGGGGCGGTCCTGGGACGAGCCGTTCACGCTCTACGGCCTGTTGGC CGAATCGGTCGACATTGCCGACGACAATCTGTCGGTCGAATTCGTGCTTCGCGAAGAGGCGCGGTTTTCCGATGGCAGCC CCGTCACCGTGGAGGATGTCATCTGGTCGTTCGAGACCCTCGGCACCGAAGGCCATCCCCGTTATCTCGGCGCATGGAGC CGGGTAGAAGGGATCGAGGCCACCGGAGATCGGTCTGTCCGGATCACGCTGGCGGAGGCCGACCGGGAGTTGGCGATGAT CATGGGTCTGCGCCCGATCCTTCAGGCGGCCCAGTGGGACGGGGCAGAGTTCACCGACTCCGGCCTCGACACCGTTCCGA TCGCCACCGCCCCCTATACGGTCACGGATTTTGAGGCCGGGCGCTTCGTGCAACTGACCCGCAACCCCGATTACTGGGGG GCGGATCTGCCATTTCGGCGCGGCACCAACGTTATCGACGAGATCCGGATGGAGTTCTTCGCCGACGGCACCGCCATGCG CGAGGCGTTTACCAGCGGCATCGTGACCACACAGCGCGAAACCTCCGCCACCGCCTGGGCCAATGATTATGACTTCCCGC GCGTGCAGGCGGGAGAGGTGGAGCTGGTGGAAGTGCCGCACCAGCGCCCATCGGGCATGACCGGCTATGTGATGAATACC CGCACACCGCTGTTTTCCGACTGGCGGGTCCGGGAGGCGATGATCCAGGCCTACAATTTCGAGTTCATCAACGCGACGGT GAACGGCGGCGTCGATCCACGCATCACCTCGCCCTACTCCAACTCACCCCTGTCGATGAACCCCGGCCCGGCCGAGGGCC GCGTGCTGGAACTGTTGGAGCCCTTCGCGGAAGAGCTGCGCCCCGGCGCGATTGAGGGGTATGCGCTGCCCGTCTCCGAT GGATCCGAGCGCAACCGCAGCGGCATCCGCACCGCCATCGCCCTGATGCAGGAGGCCGGCTACACCGTTGAAGATGGCGT GATGACCGGGGAGGCTGGCCCGGTGACGTTCGAGATCCTGCTGCAGACCGGAAGCTCCGAGAACGACGCGATCACCAACA TCTACACCGAAGCGCTGGAACGGCTGGGGATCGACGTGCAAGTCACCCGCGTGGACAGCGCCCAGTTCCGCGAGCGGCGC GACGTCTATGATTACGACATGATCTATTATCGCTGGGGTCTGTCCCTGAGCCCCGGCAATGAGCAGCGCAACTATTGGGG CTGCGAGGCGGGCCTGGTCGATGGCGGGCGCAATCTGCATGGCGGCTGCAACCCGGCGATTGACGCGATGATCGACGAGA TGCTGAGTGCATCCAGTCAGGACAATTACCGTGCGGCCGTCCGCGCCCTGGACCGGATCCTGATTTCAGACCGCTACGTC GTGCCGTTTCACCACAACCCGATCAGCCGCATCGCCTATAATTCCGAGCTGAACTTCCCGGATACGATCCCGATCTACGG CGATTGGGTCGGCTGGCAGCCCGATGTCTGGTGGGTTGAAGCGGCGGAATAA
Upstream 100 bases:
>100_bases CAATGACTTGGCCGGAGTCCAACCGAAAAGTTTGCGCATGGGCCGAGCGCCCGATAGCCTTGAGCATAACAAAACCGAGC AGCGAGAGGATCGTTCGCAG
Downstream 100 bases:
>100_bases TATTGGTCGCAGATGGGGGGGGCGCTGCCCCCTCACGTCTTTTCCCAAAGGAAAAGCCGCTCCCCCCGGAGTTGTAAGGC CCAGGTGAAAAGGGAGGCGT
Product: extracellular solute-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 603; Mature: 602
Protein sequence:
>603_residues MPTNCFSKGTLAVVLSLGLSMSALADPQHGVAMYGEPALGPDFSHLPYANPDAPTGGRIVTGEVGTFDSLNPHIRQGSTP WQLRFLTYESLLGRSWDEPFTLYGLLAESVDIADDNLSVEFVLREEARFSDGSPVTVEDVIWSFETLGTEGHPRYLGAWS RVEGIEATGDRSVRITLAEADRELAMIMGLRPILQAAQWDGAEFTDSGLDTVPIATAPYTVTDFEAGRFVQLTRNPDYWG ADLPFRRGTNVIDEIRMEFFADGTAMREAFTSGIVTTQRETSATAWANDYDFPRVQAGEVELVEVPHQRPSGMTGYVMNT RTPLFSDWRVREAMIQAYNFEFINATVNGGVDPRITSPYSNSPLSMNPGPAEGRVLELLEPFAEELRPGAIEGYALPVSD GSERNRSGIRTAIALMQEAGYTVEDGVMTGEAGPVTFEILLQTGSSENDAITNIYTEALERLGIDVQVTRVDSAQFRERR DVYDYDMIYYRWGLSLSPGNEQRNYWGCEAGLVDGGRNLHGGCNPAIDAMIDEMLSASSQDNYRAAVRALDRILISDRYV VPFHHNPISRIAYNSELNFPDTIPIYGDWVGWQPDVWWVEAAE
Sequences:
>Translated_603_residues MPTNCFSKGTLAVVLSLGLSMSALADPQHGVAMYGEPALGPDFSHLPYANPDAPTGGRIVTGEVGTFDSLNPHIRQGSTP WQLRFLTYESLLGRSWDEPFTLYGLLAESVDIADDNLSVEFVLREEARFSDGSPVTVEDVIWSFETLGTEGHPRYLGAWS RVEGIEATGDRSVRITLAEADRELAMIMGLRPILQAAQWDGAEFTDSGLDTVPIATAPYTVTDFEAGRFVQLTRNPDYWG ADLPFRRGTNVIDEIRMEFFADGTAMREAFTSGIVTTQRETSATAWANDYDFPRVQAGEVELVEVPHQRPSGMTGYVMNT RTPLFSDWRVREAMIQAYNFEFINATVNGGVDPRITSPYSNSPLSMNPGPAEGRVLELLEPFAEELRPGAIEGYALPVSD GSERNRSGIRTAIALMQEAGYTVEDGVMTGEAGPVTFEILLQTGSSENDAITNIYTEALERLGIDVQVTRVDSAQFRERR DVYDYDMIYYRWGLSLSPGNEQRNYWGCEAGLVDGGRNLHGGCNPAIDAMIDEMLSASSQDNYRAAVRALDRILISDRYV VPFHHNPISRIAYNSELNFPDTIPIYGDWVGWQPDVWWVEAAE >Mature_602_residues PTNCFSKGTLAVVLSLGLSMSALADPQHGVAMYGEPALGPDFSHLPYANPDAPTGGRIVTGEVGTFDSLNPHIRQGSTPW QLRFLTYESLLGRSWDEPFTLYGLLAESVDIADDNLSVEFVLREEARFSDGSPVTVEDVIWSFETLGTEGHPRYLGAWSR VEGIEATGDRSVRITLAEADRELAMIMGLRPILQAAQWDGAEFTDSGLDTVPIATAPYTVTDFEAGRFVQLTRNPDYWGA DLPFRRGTNVIDEIRMEFFADGTAMREAFTSGIVTTQRETSATAWANDYDFPRVQAGEVELVEVPHQRPSGMTGYVMNTR TPLFSDWRVREAMIQAYNFEFINATVNGGVDPRITSPYSNSPLSMNPGPAEGRVLELLEPFAEELRPGAIEGYALPVSDG SERNRSGIRTAIALMQEAGYTVEDGVMTGEAGPVTFEILLQTGSSENDAITNIYTEALERLGIDVQVTRVDSAQFRERRD VYDYDMIYYRWGLSLSPGNEQRNYWGCEAGLVDGGRNLHGGCNPAIDAMIDEMLSASSQDNYRAAVRALDRILISDRYVV PFHHNPISRIAYNSELNFPDTIPIYGDWVGWQPDVWWVEAAE
Specific function: Unknown
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=592, Percent_Identity=30.4054054054054, Blast_Score=268, Evalue=8e-73,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 66779; Mature: 66648
Theoretical pI: Translated: 4.17; Mature: 4.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTNCFSKGTLAVVLSLGLSMSALADPQHGVAMYGEPALGPDFSHLPYANPDAPTGGRIV CCCCCCCCCHHHHHHHHCCCHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEE TGEVGTFDSLNPHIRQGSTPWQLRFLTYESLLGRSWDEPFTLYGLLAESVDIADDNLSVE ECCCCCCCCCCHHHHCCCCCEEEEEEEHHHHHCCCCCCCHHHHHHHHHHCEECCCCCEEE FVLREEARFSDGSPVTVEDVIWSFETLGTEGHPRYLGAWSRVEGIEATGDRSVRITLAEA EEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHCCCHHHCCCCCCCCCCEEEEEEECC DRELAMIMGLRPILQAAQWDGAEFTDSGLDTVPIATAPYTVTDFEAGRFVQLTRNPDYWG CCHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEECCCCCCC ADLPFRRGTNVIDEIRMEFFADGTAMREAFTSGIVTTQRETSATAWANDYDFPRVQAGEV CCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCEECCCCCCCCCCCCCCE ELVEVPHQRPSGMTGYVMNTRTPLFSDWRVREAMIQAYNFEFINATVNGGVDPRITSPYS EEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCC NSPLSMNPGPAEGRVLELLEPFAEELRPGAIEGYALPVSDGSERNRSGIRTAIALMQEAG CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC YTVEDGVMTGEAGPVTFEILLQTGSSENDAITNIYTEALERLGIDVQVTRVDSAQFRERR CEEECCEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHC DVYDYDMIYYRWGLSLSPGNEQRNYWGCEAGLVDGGRNLHGGCNPAIDAMIDEMLSASSQ CCCCCEEEEEEECCEECCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC DNYRAAVRALDRILISDRYVVPFHHNPISRIAYNSELNFPDTIPIYGDWVGWQPDVWWVE CHHHHHHHHHHHHHHCCCEEEEECCCCHHHEEECCCCCCCCCCCCEECCCCCCCCEEEEE AAE ECC >Mature Secondary Structure PTNCFSKGTLAVVLSLGLSMSALADPQHGVAMYGEPALGPDFSHLPYANPDAPTGGRIV CCCCCCCCHHHHHHHHCCCHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEE TGEVGTFDSLNPHIRQGSTPWQLRFLTYESLLGRSWDEPFTLYGLLAESVDIADDNLSVE ECCCCCCCCCCHHHHCCCCCEEEEEEEHHHHHCCCCCCCHHHHHHHHHHCEECCCCCEEE FVLREEARFSDGSPVTVEDVIWSFETLGTEGHPRYLGAWSRVEGIEATGDRSVRITLAEA EEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHCCCHHHCCCCCCCCCCEEEEEEECC DRELAMIMGLRPILQAAQWDGAEFTDSGLDTVPIATAPYTVTDFEAGRFVQLTRNPDYWG CCHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEECCCCCCC ADLPFRRGTNVIDEIRMEFFADGTAMREAFTSGIVTTQRETSATAWANDYDFPRVQAGEV CCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCEECCCCCCCCCCCCCCE ELVEVPHQRPSGMTGYVMNTRTPLFSDWRVREAMIQAYNFEFINATVNGGVDPRITSPYS EEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCC NSPLSMNPGPAEGRVLELLEPFAEELRPGAIEGYALPVSDGSERNRSGIRTAIALMQEAG CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC YTVEDGVMTGEAGPVTFEILLQTGSSENDAITNIYTEALERLGIDVQVTRVDSAQFRERR CEEECCEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHC DVYDYDMIYYRWGLSLSPGNEQRNYWGCEAGLVDGGRNLHGGCNPAIDAMIDEMLSASSQ CCCCCEEEEEEECCEECCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC DNYRAAVRALDRILISDRYVVPFHHNPISRIAYNSELNFPDTIPIYGDWVGWQPDVWWVE CHHHHHHHHHHHHHHCCCEEEEECCCCHHHEEECCCCCCCCCCCCEECCCCCCCCEEEEE AAE ECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA