| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89054740
Identifier: 89054740
GI number: 89054740
Start: 2257526
End: 2258467
Strand: Reverse
Name: 89054740
Synonym: Jann_2249
Alternate gene names: NA
Gene position: 2258467-2257526 (Counterclockwise)
Preceding gene: 89054741
Following gene: 89054739
Centisome position: 52.3
GC content: 64.44
Gene sequence:
>942_bases ATGAACCCGCGTGATATCCTTGTGGCCGTGGCCACCCTGCCCCTGCTTGCGACGGCGGTCGCCGCCCAGGACGTGACCGT GCAAAGCTGCGGCGGTGCCTTCACCTATACCGAGGCCCCCGCCCGTGCGGTGACGCTGAACCAGCAGGCCACCGAGGTGA TGCTGGCCCTGGGGCTGGAGGACCACATGGTCGGCACCGCCTATATGGACGACGACATCCTGCCCCAATGGCAGGTGGCC TATGACAGCGTGCCCATCCTGGCCGAGCGCTATCCGGCGCGCGAGGTCGTGATCACCGCCGACCCTGATTTTCTGTTTGC AGGTTTCGCCTCCGCCTTTTCCGAAGACAACCTTGGGGCGGAGGCCGAGTGGCATGATCTTGGCATCGGGACCTATCTGG TCGATGCCTCCTGCGATGTGACCAACCCGCCCGACGTGCCCCCCGGCACCGCGCCCATCCTGACCGATATCCGTGTTATC GGACAGATCTTCGGTGTGGAGGACCGGGCAGAGGCCCTGATCGCTGAGACCGAGGCCCGCCTTGAAGCGACCGCTGCCAG CAATGCCGGTGGCGGGCGCACTGCGTTCATCTTCGACAGCGGCGACGAGACCCCGTTTTCCATAGGATGCTGCGGTGGAC CGGGGGTGCTGGTGGAAACGCTGGGGCTTGAAAACATCGCGGGCGATCTGGAAGGGCGTTGGGTCGACCTCAGCTGGGAG GTCGTGGTTGAGGAAAACCCCGACGTGATCGTGTTGATCGAGGCCGATTGGTCCAGTGCGGCAGAGAAGCGCGACTATAT GGAGACTGACCCGGTGCTGTCGCAACTGGACGCGGTGCGCGACGGGCGCTTCGTGATTGTGCCCTTCTCGCAGACCGTGC TGGGGATGCAATTCGTCGATGGGCTCGACAATCTGACCGCACAGCTCGCGGCGCTGAACTGA
Upstream 100 bases:
>100_bases CAGCTTCCCGATGCCATGGCCGTGCGGCGCTTTGCCGATGTCGTGCTGCGCCAGAACAGGCCCCTTCCCGAATTTCAGAC CTTCAAGACAGGATCCCCCT
Downstream 100 bases:
>100_bases CATGTCCGCGTGCCTGATATGACCCAGCGCCTGCCGGTCCTGACGTCTCTGGCCCTTGCCGGATTGGTGCTGGCCGTTCT GGCCGGTATCTTCTTCGGAA
Product: periplasmic binding protein
Products: NA
Alternate protein names: Iron Transport Lipoprotein; Iron ABC Transporter; Transporter Subunit; Fe3+-Hydroxamate ABC Transporter Periplasmic Protein; ABC Transporter; Iron Compound ABC Transporter
Number of amino acids: Translated: 313; Mature: 313
Protein sequence:
>313_residues MNPRDILVAVATLPLLATAVAAQDVTVQSCGGAFTYTEAPARAVTLNQQATEVMLALGLEDHMVGTAYMDDDILPQWQVA YDSVPILAERYPAREVVITADPDFLFAGFASAFSEDNLGAEAEWHDLGIGTYLVDASCDVTNPPDVPPGTAPILTDIRVI GQIFGVEDRAEALIAETEARLEATAASNAGGGRTAFIFDSGDETPFSIGCCGGPGVLVETLGLENIAGDLEGRWVDLSWE VVVEENPDVIVLIEADWSSAAEKRDYMETDPVLSQLDAVRDGRFVIVPFSQTVLGMQFVDGLDNLTAQLAALN
Sequences:
>Translated_313_residues MNPRDILVAVATLPLLATAVAAQDVTVQSCGGAFTYTEAPARAVTLNQQATEVMLALGLEDHMVGTAYMDDDILPQWQVA YDSVPILAERYPAREVVITADPDFLFAGFASAFSEDNLGAEAEWHDLGIGTYLVDASCDVTNPPDVPPGTAPILTDIRVI GQIFGVEDRAEALIAETEARLEATAASNAGGGRTAFIFDSGDETPFSIGCCGGPGVLVETLGLENIAGDLEGRWVDLSWE VVVEENPDVIVLIEADWSSAAEKRDYMETDPVLSQLDAVRDGRFVIVPFSQTVLGMQFVDGLDNLTAQLAALN >Mature_313_residues MNPRDILVAVATLPLLATAVAAQDVTVQSCGGAFTYTEAPARAVTLNQQATEVMLALGLEDHMVGTAYMDDDILPQWQVA YDSVPILAERYPAREVVITADPDFLFAGFASAFSEDNLGAEAEWHDLGIGTYLVDASCDVTNPPDVPPGTAPILTDIRVI GQIFGVEDRAEALIAETEARLEATAASNAGGGRTAFIFDSGDETPFSIGCCGGPGVLVETLGLENIAGDLEGRWVDLSWE VVVEENPDVIVLIEADWSSAAEKRDYMETDPVLSQLDAVRDGRFVIVPFSQTVLGMQFVDGLDNLTAQLAALN
Specific function: Unknown
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33325; Mature: 33325
Theoretical pI: Translated: 3.62; Mature: 3.62
Prosite motif: PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPRDILVAVATLPLLATAVAAQDVTVQSCGGAFTYTEAPARAVTLNQQATEVMLALGLE CCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCCEEEEECHHHHHHHHHCCCC DHMVGTAYMDDDILPQWQVAYDSVPILAERYPAREVVITADPDFLFAGFASAFSEDNLGA HHEEEEEECCCCCCCCEEECCCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCC EAEWHDLGIGTYLVDASCDVTNPPDVPPGTAPILTDIRVIGQIFGVEDRAEALIAETEAR CCCEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LEATAASNAGGGRTAFIFDSGDETPFSIGCCGGPGVLVETLGLENIAGDLEGRWVDLSWE HEEEECCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEEECCHHHHCCCCCCEEEEEEEE VVVEENPDVIVLIEADWSSAAEKRDYMETDPVLSQLDAVRDGRFVIVPFSQTVLGMQFVD EEEECCCCEEEEEECCCCCHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH GLDNLTAQLAALN HHHHHHHHHEECC >Mature Secondary Structure MNPRDILVAVATLPLLATAVAAQDVTVQSCGGAFTYTEAPARAVTLNQQATEVMLALGLE CCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCCEEEEECHHHHHHHHHCCCC DHMVGTAYMDDDILPQWQVAYDSVPILAERYPAREVVITADPDFLFAGFASAFSEDNLGA HHEEEEEECCCCCCCCEEECCCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCC EAEWHDLGIGTYLVDASCDVTNPPDVPPGTAPILTDIRVIGQIFGVEDRAEALIAETEAR CCCEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LEATAASNAGGGRTAFIFDSGDETPFSIGCCGGPGVLVETLGLENIAGDLEGRWVDLSWE HEEEECCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEEECCHHHHCCCCCCEEEEEEEE VVVEENPDVIVLIEADWSSAAEKRDYMETDPVLSQLDAVRDGRFVIVPFSQTVLGMQFVD EEEECCCCEEEEEECCCCCHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH GLDNLTAQLAALN HHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA