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The map label for this gene is ygaU [C]

Identifier: 89054684

GI number: 89054684

Start: 2198399

End: 2199964

Strand: Direct

Name: ygaU [C]

Synonym: Jann_2193

Alternate gene names: 89054684

Gene position: 2198399-2199964 (Clockwise)

Preceding gene: 89054682

Following gene: 89054685

Centisome position: 50.91

GC content: 68.71

Gene sequence:

>1566_bases
ATGAAACTTGCGGCGATGTTCGGGTCCAGTTCGGGCGCGGTCGGGGCGACGGCTGTCGGTGCGGTCGCGCTGGTTGCGGG
CGCGATTGGCTTCACCGTCTTCAACGGGTCCGGTGCCCCCCTTCAAGATCAACCTGTTGCGCTCGTTGTCGCTGACGGAG
CCTTGGCTGATCCGGCCATGGAGGCCGCGGGCACGGCAACATTACCCGATCCTGTGCCCGGCATTGAGCCGCCCCGCCTT
GACCTCGTGCGCGTCGAGGCCGGGGGTGAGACGGTGATCGCCGGGCAGACCTCTCCCGATATCACGGTCGTGATCCTTCT
GGACGGCCTGCAATTTGCAGTGACCCGGTCCGATGGGGCAGGGGATTTCGTGTCCCTCGTGACCCTTCCTCCCTCGCCGA
TGCCCCGCGCCCTCAGCGTGGAGGCCTGGCCCGAGAATGCCCCCGTGCTGGCCGGTCTGGAGACGGTCTTTATCGCGCCT
GTCACCGGCCCGGGGGCGCAGCCTTCGGCCACGGCAGGGGGGCCGGGCGGCGGTGAGGTTGCGGCCCTCGATCCGTCCAC
GATCATGGATCCTGACGGGCCACAGGGCGTTGCTGCCGACAGCGGGGCCGGGGCCGGGGACATCGCCCCGGTAGATGGAG
TCGAAATCGGCGCTGTCCCCGATGAGGAGCAGGTCGCCCTGGTGGTCCCCGCCGTTGAGGCGTTGCCTGCCGCGACGCCA
TCCGCAGGCCCGGCTGACACGGCGCCGGACGCCCCGCTGGATGGGGCCACACAAGCCCCGTCTGTCGTCGGGGATGCATC
CCCACCCGCAGCCGGTGCGGAGGAGACAGTTGAGATCGCATCCCTCCAGCCAGGTGATGACGCGCCCACGCCTGCATCAA
CGGGGAGCGGCCCCGGCGTAGCGTCCTCTGGCCCGGGATCATTGACGACGCCCACCCTCTCTGCCGCCCCGGCGGCCGCC
CCCCCCGCATCCACGGGAGACGGCACGCCGCGCCCGGCCCGTGCCGCCGCGCCGGCAGTTGTCATCGCCGGACCCGAGGG
GGTGCGCGTGGTGCAGGGACCCACGCCAGAGCCCGAGGTGCAGACCAGCGTCCGGCTTGACGCGATTTCCTACGACGCGG
AGGGGCAGGTCATCCTGGCGGGCCGCGGCCCTGTTGCGGCGGATATTCAGGTCTATCTCAACAATCAGCCCATCCAGTTG
GGCGAGATCGGGCCGGGCGGCGCGTGGTCGCTGCAACTGCCCGATGTGGATCCGGGCACATACACGCTCGCGGTGGCGGA
ACTGGCCGAGGACGGCTCCACCACCAGCCGGGTTGAGACACCGTTTCTGCGAGAAGACCCGGACCGGGTCGCCGAGGCGC
CGGTGGCGCAGGCCGCAGGCATTGACGTGATCACCGTGCAGCCCGGATTTACGTTATGGGGCATCGCGCAGGACATGTTT
GGCGATGGCATCCTCTATGTGCAGATCTTTGACGAGAACCAGGACCAGATCCGCGATCCGAACTGGATTTTTCCCGGGCA
GATCTTTCGCCTGCCTGACGTCGAGCAAAGCAATCGCGAGAACTGA

Upstream 100 bases:

>100_bases
AGGGCCCTCAAGCGCGGTATGCGCTGCTGGTCCAACGCCTGGGCCGGACGCTCCGGCTTGCGGGGTTTTTTGAGGGGGAA
ACCGTGCCAGAGGTCACGCG

Downstream 100 bases:

>100_bases
GCCGCGCGCTCTGGTCTCTGGCCCCGGGGCGTCCTAGGTAGAGGGCAAGACAAGGGACGCCCGCCACATGCCAGCCGATA
CCTCGACCCAAACCACACCC

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: LysM Domain-Containing Protein

Number of amino acids: Translated: 521; Mature: 521

Protein sequence:

>521_residues
MKLAAMFGSSSGAVGATAVGAVALVAGAIGFTVFNGSGAPLQDQPVALVVADGALADPAMEAAGTATLPDPVPGIEPPRL
DLVRVEAGGETVIAGQTSPDITVVILLDGLQFAVTRSDGAGDFVSLVTLPPSPMPRALSVEAWPENAPVLAGLETVFIAP
VTGPGAQPSATAGGPGGGEVAALDPSTIMDPDGPQGVAADSGAGAGDIAPVDGVEIGAVPDEEQVALVVPAVEALPAATP
SAGPADTAPDAPLDGATQAPSVVGDASPPAAGAEETVEIASLQPGDDAPTPASTGSGPGVASSGPGSLTTPTLSAAPAAA
PPASTGDGTPRPARAAAPAVVIAGPEGVRVVQGPTPEPEVQTSVRLDAISYDAEGQVILAGRGPVAADIQVYLNNQPIQL
GEIGPGGAWSLQLPDVDPGTYTLAVAELAEDGSTTSRVETPFLREDPDRVAEAPVAQAAGIDVITVQPGFTLWGIAQDMF
GDGILYVQIFDENQDQIRDPNWIFPGQIFRLPDVEQSNREN

Sequences:

>Translated_521_residues
MKLAAMFGSSSGAVGATAVGAVALVAGAIGFTVFNGSGAPLQDQPVALVVADGALADPAMEAAGTATLPDPVPGIEPPRL
DLVRVEAGGETVIAGQTSPDITVVILLDGLQFAVTRSDGAGDFVSLVTLPPSPMPRALSVEAWPENAPVLAGLETVFIAP
VTGPGAQPSATAGGPGGGEVAALDPSTIMDPDGPQGVAADSGAGAGDIAPVDGVEIGAVPDEEQVALVVPAVEALPAATP
SAGPADTAPDAPLDGATQAPSVVGDASPPAAGAEETVEIASLQPGDDAPTPASTGSGPGVASSGPGSLTTPTLSAAPAAA
PPASTGDGTPRPARAAAPAVVIAGPEGVRVVQGPTPEPEVQTSVRLDAISYDAEGQVILAGRGPVAADIQVYLNNQPIQL
GEIGPGGAWSLQLPDVDPGTYTLAVAELAEDGSTTSRVETPFLREDPDRVAEAPVAQAAGIDVITVQPGFTLWGIAQDMF
GDGILYVQIFDENQDQIRDPNWIFPGQIFRLPDVEQSNREN
>Mature_521_residues
MKLAAMFGSSSGAVGATAVGAVALVAGAIGFTVFNGSGAPLQDQPVALVVADGALADPAMEAAGTATLPDPVPGIEPPRL
DLVRVEAGGETVIAGQTSPDITVVILLDGLQFAVTRSDGAGDFVSLVTLPPSPMPRALSVEAWPENAPVLAGLETVFIAP
VTGPGAQPSATAGGPGGGEVAALDPSTIMDPDGPQGVAADSGAGAGDIAPVDGVEIGAVPDEEQVALVVPAVEALPAATP
SAGPADTAPDAPLDGATQAPSVVGDASPPAAGAEETVEIASLQPGDDAPTPASTGSGPGVASSGPGSLTTPTLSAAPAAA
PPASTGDGTPRPARAAAPAVVIAGPEGVRVVQGPTPEPEVQTSVRLDAISYDAEGQVILAGRGPVAADIQVYLNNQPIQL
GEIGPGGAWSLQLPDVDPGTYTLAVAELAEDGSTTSRVETPFLREDPDRVAEAPVAQAAGIDVITVQPGFTLWGIAQDMF
GDGILYVQIFDENQDQIRDPNWIFPGQIFRLPDVEQSNREN

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51641; Mature: 51641

Theoretical pI: Translated: 3.50; Mature: 3.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLAAMFGSSSGAVGATAVGAVALVAGAIGFTVFNGSGAPLQDQPVALVVADGALADPAM
CEEEEEECCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEEEECCCCCCCHH
EAAGTATLPDPVPGIEPPRLDLVRVEAGGETVIAGQTSPDITVVILLDGLQFAVTRSDGA
HHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCEEEEEEECCCEEEEEECCCC
GDFVSLVTLPPSPMPRALSVEAWPENAPVLAGLETVFIAPVTGPGAQPSATAGGPGGGEV
CCEEEEEECCCCCCCCEEEEEECCCCCCEEECCEEEEEEECCCCCCCCCCCCCCCCCCCE
AALDPSTIMDPDGPQGVAADSGAGAGDIAPVDGVEIGAVPDEEQVALVVPAVEALPAATP
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECHHHCCCCCC
SAGPADTAPDAPLDGATQAPSVVGDASPPAAGAEETVEIASLQPGDDAPTPASTGSGPGV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
ASSGPGSLTTPTLSAAPAAAPPASTGDGTPRPARAAAPAVVIAGPEGVRVVQGPTPEPEV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCEEEEECCCCCEEEECCCCCCCC
QTSVRLDAISYDAEGQVILAGRGPVAADIQVYLNNQPIQLGEIGPGGAWSLQLPDVDPGT
EEEEEEEEEEECCCCCEEEECCCCCEEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCC
YTLAVAELAEDGSTTSRVETPFLREDPDRVAEAPVAQAAGIDVITVQPGFTLWGIAQDMF
EEEEEEEHHCCCCCCCEECCCCCCCCHHHHHHCCCHHHCCEEEEEECCCCEEEEEHHHHC
GDGILYVQIFDENQDQIRDPNWIFPGQIFRLPDVEQSNREN
CCCEEEEEEECCCHHHCCCCCEECCCCEEECCCCCCCCCCC
>Mature Secondary Structure
MKLAAMFGSSSGAVGATAVGAVALVAGAIGFTVFNGSGAPLQDQPVALVVADGALADPAM
CEEEEEECCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEEEECCCCCCCHH
EAAGTATLPDPVPGIEPPRLDLVRVEAGGETVIAGQTSPDITVVILLDGLQFAVTRSDGA
HHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCEEEEEEECCCEEEEEECCCC
GDFVSLVTLPPSPMPRALSVEAWPENAPVLAGLETVFIAPVTGPGAQPSATAGGPGGGEV
CCEEEEEECCCCCCCCEEEEEECCCCCCEEECCEEEEEEECCCCCCCCCCCCCCCCCCCE
AALDPSTIMDPDGPQGVAADSGAGAGDIAPVDGVEIGAVPDEEQVALVVPAVEALPAATP
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECHHHCCCCCC
SAGPADTAPDAPLDGATQAPSVVGDASPPAAGAEETVEIASLQPGDDAPTPASTGSGPGV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
ASSGPGSLTTPTLSAAPAAAPPASTGDGTPRPARAAAPAVVIAGPEGVRVVQGPTPEPEV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCEEEEECCCCCEEEECCCCCCCC
QTSVRLDAISYDAEGQVILAGRGPVAADIQVYLNNQPIQLGEIGPGGAWSLQLPDVDPGT
EEEEEEEEEEECCCCCEEEECCCCCEEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCC
YTLAVAELAEDGSTTSRVETPFLREDPDRVAEAPVAQAAGIDVITVQPGFTLWGIAQDMF
EEEEEEEHHCCCCCCCEECCCCCCCCHHHHHHCCCHHHCCEEEEEECCCCEEEEEHHHHC
GDGILYVQIFDENQDQIRDPNWIFPGQIFRLPDVEQSNREN
CCCEEEEEEECCCHHHCCCCCEECCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA