Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89054668

Identifier: 89054668

GI number: 89054668

Start: 2185441

End: 2186265

Strand: Direct

Name: 89054668

Synonym: Jann_2177

Alternate gene names: NA

Gene position: 2185441-2186265 (Clockwise)

Preceding gene: 89054667

Following gene: 89054669

Centisome position: 50.61

GC content: 62.67

Gene sequence:

>825_bases
ATGCCCGAATTAGCTGAGTTTTTGCCGATGCTGGCGCTGATCCTTGCGATTGGGGCCATGGCCGGCGTTATCGCGGGCCT
TCTTGGCGTGGGCGGCGGCATTGTCCTGGTGCCCGCGTTCTTCTTTGCCTTTGAAGGGCTTGGATACAGCACCGATGGGT
TGATGCAGATCTGCCTTGCCACGTCGCTGGCCACGATTGTGGTGACGTCGGTCAGGTCCGTCATGGGCCACCACAAGAAG
GGGGCGGTGGACTGGGATATCCTGCGCGCCTGGGGGCCGGGCATCGCCATCGGCGCGGCTTTGGGTGTCATCGTGGCCAG
TGGCCTCCGCAACGAAGTGTTGATGGCCATTTTCGGTGTTCTGGGTCTTGGCGTGGGCCTTTACATGGCGCTTGGACGGT
CTGAGTGGCGGTTGGGCGACCAGATGCCCGGAGCCTTCGGCACCATCGCCTCATCGCCGGTCCTGGGGTTTCTGTCGGTC
CTGATGGGGATTGGCGGCGGGTCCTTCGGGGTACCGATGATGACGCTGTTTGGCGTGGCGATCCACCGGGCGGTGGCGAC
GGCGGCGGGCTTCGGTGTGATCATCGCGGTGCCTGCGGTCATTGGATTTCTTCTGACGGGCAGTGATGTGGCCAACCGGC
CGCCCTATGCTGTGGGCCAGGTCAATATCGTGGCCTTCGTGGCCGTCATCGCGATGACGCTGATCACCACGCCATGGGGC
GTGAAGCTGGCCCATGCGATGGACCCCAAACCGCTCAAGCGCGTCTTTGCGGTCTTCATCATGATCATGGCGCTCAACAT
GCTGCGCAAGGCCTCTGGTTATTGA

Upstream 100 bases:

>100_bases
GAGTAACTGCCCCCATCACCGGTCATCGCGATTATTTGGTCCTGGGCCTTTTGCACAAGGGGCCGCTGGGGTAGCACTCC
CTCAACGAATGGGGGGATGC

Downstream 100 bases:

>100_bases
GCTGGCTCACGGCCGGGTGGCAGGTTTTCCCGGCTGAGCCTGCCGTTGAGGCCTGGGTCGCGGCGGCGCAGATGCCTGCG
TTGACAGCGGCGCAGCAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MPELAEFLPMLALILAIGAMAGVIAGLLGVGGGIVLVPAFFFAFEGLGYSTDGLMQICLATSLATIVVTSVRSVMGHHKK
GAVDWDILRAWGPGIAIGAALGVIVASGLRNEVLMAIFGVLGLGVGLYMALGRSEWRLGDQMPGAFGTIASSPVLGFLSV
LMGIGGGSFGVPMMTLFGVAIHRAVATAAGFGVIIAVPAVIGFLLTGSDVANRPPYAVGQVNIVAFVAVIAMTLITTPWG
VKLAHAMDPKPLKRVFAVFIMIMALNMLRKASGY

Sequences:

>Translated_274_residues
MPELAEFLPMLALILAIGAMAGVIAGLLGVGGGIVLVPAFFFAFEGLGYSTDGLMQICLATSLATIVVTSVRSVMGHHKK
GAVDWDILRAWGPGIAIGAALGVIVASGLRNEVLMAIFGVLGLGVGLYMALGRSEWRLGDQMPGAFGTIASSPVLGFLSV
LMGIGGGSFGVPMMTLFGVAIHRAVATAAGFGVIIAVPAVIGFLLTGSDVANRPPYAVGQVNIVAFVAVIAMTLITTPWG
VKLAHAMDPKPLKRVFAVFIMIMALNMLRKASGY
>Mature_273_residues
PELAEFLPMLALILAIGAMAGVIAGLLGVGGGIVLVPAFFFAFEGLGYSTDGLMQICLATSLATIVVTSVRSVMGHHKKG
AVDWDILRAWGPGIAIGAALGVIVASGLRNEVLMAIFGVLGLGVGLYMALGRSEWRLGDQMPGAFGTIASSPVLGFLSVL
MGIGGGSFGVPMMTLFGVAIHRAVATAAGFGVIIAVPAVIGFLLTGSDVANRPPYAVGQVNIVAFVAVIAMTLITTPWGV
KLAHAMDPKPLKRVFAVFIMIMALNMLRKASGY

Specific function: Unknown

COG id: COG0730

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0721 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002781 [H]

Pfam domain/function: PF01925 DUF81 [H]

EC number: NA

Molecular weight: Translated: 28184; Mature: 28053

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PELAEFLPMLALILAIGAMAGVIAGLLGVGGGIVLVPAFFFAFEGLGYSTDGLMQICLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
TSLATIVVTSVRSVMGHHKKGAVDWDILRAWGPGIAIGAALGVIVASGLRNEVLMAIFGV
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLGVGLYMALGRSEWRLGDQMPGAFGTIASSPVLGFLSVLMGIGGGSFGVPMMTLFGVA
HHHHHHHHHHHCCCHHCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
IHRAVATAAGFGVIIAVPAVIGFLLTGSDVANRPPYAVGQVNIVAFVAVIAMTLITTPWG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
VKLAHAMDPKPLKRVFAVFIMIMALNMLRKASGY
CHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]