Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

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The map label for this gene is 89054175

Identifier: 89054175

GI number: 89054175

Start: 1668805

End: 1669164

Strand: Direct

Name: 89054175

Synonym: Jann_1684

Alternate gene names: NA

Gene position: 1668805-1669164 (Clockwise)

Preceding gene: 89054174

Following gene: 89054176

Centisome position: 38.65

GC content: 64.72

Gene sequence:

>360_bases
ATGACCGATCCGATCCGCACCTGGCCCGAGCTGCGCGATTTCGCCGTCGCGCTGGACCTGCCGAAGGTGGAGGATGCCGT
CAGCTGGGGCAATCCCAACCTCAAGGCCCACGGCAAGCTGTGGTGTTGGTGGTCACCTTACATCGACGCCGCGATCTTCA
AGGGCGCCATCGAGGAACGCGAGATGCTGATGCAGGCGGACCCGGAGACCTTCGTGATCCACGACCATTATGCCAAATCC
GGGCTGGTCCTTGTGGCCGGTGGAAAGCTGGACCGCGACTGGGCCGAGGCGCGCCTGCGCCGAACGTGGCGGGACCTTGC
GCCTAAGAAATGGCTCGCAGTCTACGACGCGCGCCAGTGA

Upstream 100 bases:

>100_bases
GCGGACCCGGCGGTTCATCTGTCGGTGCCCATCACCGTCGATGCAGGGCAGGGGGAAACCTGGGCGGAGGCCCATTGATG
GCCCGAATATTGGAGACGGA

Downstream 100 bases:

>100_bases
TGCGGGGGCCATACGGATGGTCAGACGCGCGCCGAGGGGGCACCATATGCTGATCGCGTTTAACAAACCGATGAACACGC
TGTCTCAATTCACCTCCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 119; Mature: 118

Protein sequence:

>119_residues
MTDPIRTWPELRDFAVALDLPKVEDAVSWGNPNLKAHGKLWCWWSPYIDAAIFKGAIEEREMLMQADPETFVIHDHYAKS
GLVLVAGGKLDRDWAEARLRRTWRDLAPKKWLAVYDARQ

Sequences:

>Translated_119_residues
MTDPIRTWPELRDFAVALDLPKVEDAVSWGNPNLKAHGKLWCWWSPYIDAAIFKGAIEEREMLMQADPETFVIHDHYAKS
GLVLVAGGKLDRDWAEARLRRTWRDLAPKKWLAVYDARQ
>Mature_118_residues
TDPIRTWPELRDFAVALDLPKVEDAVSWGNPNLKAHGKLWCWWSPYIDAAIFKGAIEEREMLMQADPETFVIHDHYAKSG
LVLVAGGKLDRDWAEARLRRTWRDLAPKKWLAVYDARQ

Specific function: Unknown

COG id: COG3801

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13804; Mature: 13673

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPIRTWPELRDFAVALDLPKVEDAVSWGNPNLKAHGKLWCWWSPYIDAAIFKGAIEER
CCCCCCCCHHHHHEEEEECCCCCHHHHCCCCCCEEECCEEEEEECCHHHHHHHHHHHHHH
EMLMQADPETFVIHDHYAKSGLVLVAGGKLDRDWAEARLRRTWRDLAPKKWLAVYDARQ
HHHHHCCCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
>Mature Secondary Structure 
TDPIRTWPELRDFAVALDLPKVEDAVSWGNPNLKAHGKLWCWWSPYIDAAIFKGAIEER
CCCCCCCHHHHHEEEEECCCCCHHHHCCCCCCEEECCEEEEEECCHHHHHHHHHHHHHH
EMLMQADPETFVIHDHYAKSGLVLVAGGKLDRDWAEARLRRTWRDLAPKKWLAVYDARQ
HHHHHCCCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA