| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89054167
Identifier: 89054167
GI number: 89054167
Start: 1660015
End: 1661238
Strand: Reverse
Name: 89054167
Synonym: Jann_1676
Alternate gene names: NA
Gene position: 1661238-1660015 (Counterclockwise)
Preceding gene: 89054168
Following gene: 89054166
Centisome position: 38.47
GC content: 63.89
Gene sequence:
>1224_bases ATGTTTCGCGCCCCCCTCTTGGCATCTGTTGCCGCGTTAACCCTCATATCCGCGCCCCTGTCCGCGCAAACCGTCGACGC CCAACGCCAGGCCGTGTTCCAGCAAATGCTCTCGGACCCCGGCAACCGCGAGCTGATGCGGGATTATGCCCGCCTGTCGG TGGAGGCCCGCGATTTTGAGGCCGCCGCCGCCACGCTGGAGCGTCTCGTCGATCAGGAACCCGAAAATGTCAGCGCCCGG GTGGAGCTGGCCGTGGCCTATTTCGCCCTCGGCTCCTACGCGGTGGCCGAGTATCATCTGGCGGCGGCTGAGGCCTCTGG CGCGCTGGCACCCGCTCAGGCCGCGCAAGTCGCCCGCTACCGCGAAGAGGCCCAGGACCGCGACGACGGATCAGCCTACT CTGGCCGTCTGGCCGTCGGATATGCCTATGCCGACACCTCCGACGAAAGCGGCGCCTTTGTCAGCGGCTCGGTCGACTGG CGCCTCGATCTGGGCAATGCTAATGTCACGCAATGGGTCACCGAGTTTGCCTTCACCAGCTATCAGCCGGGCGACGCCTC CATCAACGGGCGCAATGTGGCGCGCCTGCGCACGGGTCCTGAATGGCGGCTGTCGGGCGATGCATACGGGCCGCGCCTGC AAGCCTACGGTGAACTGGAATATTTCCAGAACGACGATCTGCTGCCGGGCGATTATACGTCGTGGGCCGCGGGCCTCGCC TACGCGAACCCGATCAATGAGATGATCACGGTCTACGCCGACCTCAGCACAGGCCGTGAAGTGGCAAACGATGCTGCGGA TGCGGACTTCGACTTCACCGAATTTGATCTGGGCATCACCTACCGCCCCTCTCGCGACACGCGCCTGCGTCTGTCCGGCA CGTGGAACACGCGCAATCAGGTCGACGCCGCAACGCCCTTTGACTTCACCGGGTCCGCTATCCGCCTGTCGGCGCAGCAT GCCTTTGATATCGGGTGGGAGGCCTTGCCAAATCGCTGGGTTGTGGGCGCGTTCGCCGAGGCGGGCCAGCTGGAGCGCAA CGACGCCGGCACGATCACCGAGTTCGACGAACAAAGCTATGGCGTGTTGCTGCGGGCCTTCGTCTTTGAAGACATCTTCA TCGAAACCGCCGCCGCGCAGGTCAATGAAGATACTCTGTCGGGCGGCACCACCACAACGCGCGAAGAGATGATTTACACG TTCCAAGTCGGTTGGGAGTTCTGA
Upstream 100 bases:
>100_bases CGTGCCGACAGGGGTGGGCGCTTTATTGTATAATGTGCCTTGCCCGACTACCGTCTGCGCAATTCAGGTGATTTTCATTT TGTACGTGAGGCCCCAAGCC
Downstream 100 bases:
>100_bases GCATGCCCTTCAAGACATTCAAGATCGCCGCAGTGGCGGCCCTCGCCCTTGCGGCCCCGTTTGCAGCCCCGGTCGCCGCG CAAAACATCGGGACCGTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 407; Mature: 407
Protein sequence:
>407_residues MFRAPLLASVAALTLISAPLSAQTVDAQRQAVFQQMLSDPGNRELMRDYARLSVEARDFEAAAATLERLVDQEPENVSAR VELAVAYFALGSYAVAEYHLAAAEASGALAPAQAAQVARYREEAQDRDDGSAYSGRLAVGYAYADTSDESGAFVSGSVDW RLDLGNANVTQWVTEFAFTSYQPGDASINGRNVARLRTGPEWRLSGDAYGPRLQAYGELEYFQNDDLLPGDYTSWAAGLA YANPINEMITVYADLSTGREVANDAADADFDFTEFDLGITYRPSRDTRLRLSGTWNTRNQVDAATPFDFTGSAIRLSAQH AFDIGWEALPNRWVVGAFAEAGQLERNDAGTITEFDEQSYGVLLRAFVFEDIFIETAAAQVNEDTLSGGTTTTREEMIYT FQVGWEF
Sequences:
>Translated_407_residues MFRAPLLASVAALTLISAPLSAQTVDAQRQAVFQQMLSDPGNRELMRDYARLSVEARDFEAAAATLERLVDQEPENVSAR VELAVAYFALGSYAVAEYHLAAAEASGALAPAQAAQVARYREEAQDRDDGSAYSGRLAVGYAYADTSDESGAFVSGSVDW RLDLGNANVTQWVTEFAFTSYQPGDASINGRNVARLRTGPEWRLSGDAYGPRLQAYGELEYFQNDDLLPGDYTSWAAGLA YANPINEMITVYADLSTGREVANDAADADFDFTEFDLGITYRPSRDTRLRLSGTWNTRNQVDAATPFDFTGSAIRLSAQH AFDIGWEALPNRWVVGAFAEAGQLERNDAGTITEFDEQSYGVLLRAFVFEDIFIETAAAQVNEDTLSGGTTTTREEMIYT FQVGWEF >Mature_407_residues MFRAPLLASVAALTLISAPLSAQTVDAQRQAVFQQMLSDPGNRELMRDYARLSVEARDFEAAAATLERLVDQEPENVSAR VELAVAYFALGSYAVAEYHLAAAEASGALAPAQAAQVARYREEAQDRDDGSAYSGRLAVGYAYADTSDESGAFVSGSVDW RLDLGNANVTQWVTEFAFTSYQPGDASINGRNVARLRTGPEWRLSGDAYGPRLQAYGELEYFQNDDLLPGDYTSWAAGLA YANPINEMITVYADLSTGREVANDAADADFDFTEFDLGITYRPSRDTRLRLSGTWNTRNQVDAATPFDFTGSAIRLSAQH AFDIGWEALPNRWVVGAFAEAGQLERNDAGTITEFDEQSYGVLLRAFVFEDIFIETAAAQVNEDTLSGGTTTTREEMIYT FQVGWEF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44597; Mature: 44597
Theoretical pI: Translated: 4.02; Mature: 4.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFRAPLLASVAALTLISAPLSAQTVDAQRQAVFQQMLSDPGNRELMRDYARLSVEARDFE CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHH AAAATLERLVDQEPENVSARVELAVAYFALGSYAVAEYHLAAAEASGALAPAQAAQVARY HHHHHHHHHHCCCCCCCCHHEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH REEAQDRDDGSAYSGRLAVGYAYADTSDESGAFVSGSVDWRLDLGNANVTQWVTEFAFTS HHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCEEECCEEEEEECCCCHHHHHHHHHHHCC YQPGDASINGRNVARLRTGPEWRLSGDAYGPRLQAYGELEYFQNDDLLPGDYTSWAAGLA CCCCCCCCCCCEEEEEECCCCEEECCCCCCCCEEECCCEEEECCCCCCCCCCHHHHHHHH YANPINEMITVYADLSTGREVANDAADADFDFTEFDLGITYRPSRDTRLRLSGTWNTRNQ HHCCHHHHEEEEECCCCCHHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCC VDAATPFDFTGSAIRLSAQHAFDIGWEALPNRWVVGAFAEAGQLERNDAGTITEFDEQSY CCCCCCCCCCCCEEEEECCHHHHCCHHHCCCCEEEEEHHHCCCCCCCCCCCEEECCCCHH GVLLRAFVFEDIFIETAAAQVNEDTLSGGTTTTREEMIYTFQVGWEF HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEEEEECCC >Mature Secondary Structure MFRAPLLASVAALTLISAPLSAQTVDAQRQAVFQQMLSDPGNRELMRDYARLSVEARDFE CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHH AAAATLERLVDQEPENVSARVELAVAYFALGSYAVAEYHLAAAEASGALAPAQAAQVARY HHHHHHHHHHCCCCCCCCHHEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH REEAQDRDDGSAYSGRLAVGYAYADTSDESGAFVSGSVDWRLDLGNANVTQWVTEFAFTS HHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCEEECCEEEEEECCCCHHHHHHHHHHHCC YQPGDASINGRNVARLRTGPEWRLSGDAYGPRLQAYGELEYFQNDDLLPGDYTSWAAGLA CCCCCCCCCCCEEEEEECCCCEEECCCCCCCCEEECCCEEEECCCCCCCCCCHHHHHHHH YANPINEMITVYADLSTGREVANDAADADFDFTEFDLGITYRPSRDTRLRLSGTWNTRNQ HHCCHHHHEEEEECCCCCHHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCC VDAATPFDFTGSAIRLSAQHAFDIGWEALPNRWVVGAFAEAGQLERNDAGTITEFDEQSY CCCCCCCCCCCCEEEEECCHHHHCCHHHCCCCEEEEEHHHCCCCCCCCCCCEEECCCCHH GVLLRAFVFEDIFIETAAAQVNEDTLSGGTTTTREEMIYTFQVGWEF HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA