| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89054166
Identifier: 89054166
GI number: 89054166
Start: 1659122
End: 1660012
Strand: Reverse
Name: 89054166
Synonym: Jann_1675
Alternate gene names: NA
Gene position: 1660012-1659122 (Counterclockwise)
Preceding gene: 89054167
Following gene: 89054164
Centisome position: 38.44
GC content: 65.1
Gene sequence:
>891_bases ATGCCCTTCAAGACATTCAAGATCGCCGCAGTGGCGGCCCTCGCCCTTGCGGCCCCGTTTGCAGCCCCGGTCGCCGCGCA AAACATCGGGACCGTTGCCTCGACCGAGCCGACGCTGCGCGGCACGCCGCCCGGCGCGGGCACACGTCCCCTGACCCTCG GCACCGGCGTCGTCCAGAACGAGACGGTGGCCGCATCCGCCTCGGGCCGTGGTCAGATCCTGTTTATCGACCAGTCGACC CTGTCGCTAGCCCCGAACACCACGATTGTGCTCGACCAGTTCGTCTTCAACCCCAATGGCTCCGGCCAGATGGGTCTGTC GATGACCGAAGGCGCGCTGCGCTTCATCGGCGGCACGCTGTCGCGCGGGCAAGAGGCGACGGTCACGACGCCCACAGCCA CCATCGGCATCCGTGGGTCCAGCGCGCTGATCGTTCACCTGAACGGACAAACGGTCGCTGTTTTTCTGGCTGGAGAGCGG TTGTGCCTCTACACGGCCGGCGGACAGCGCGCCTGCACCAGCCGACGCGGCGGTGTTCTGACGGTCGAAGGCTATCAGGG CCGCGTGAACCCTGATTATCTGGCGCAGATCCTGTCCCTGATTGACGGCGCGCCACAGGGCGGCAGTGGCTCGGGTCTTG GGTCAGGGGTCGGCGGGCCCAACCCTTCGGATCGCGGTCCGGTCTCCACCGGCGGTGAGGAATTCGATCCAGAAATCTTC GACGATGACTTCCGCGAAGATGATCTGTTCCTTGGCCTGCCCGAGCAACAGATGGAGATGGAAGAGGTGATATTGGACGA TGCAGTTATGGATCCTATGCCGACGACGCCGACCAATTGCGACCCCCAGGACCCGGCGCCGGGGTGTTTCGGAACGCCGA CTTTCCCGTAA
Upstream 100 bases:
>100_bases CCGCCGCCGCGCAGGTCAATGAAGATACTCTGTCGGGCGGCACCACCACAACGCGCGAAGAGATGATTTACACGTTCCAA GTCGGTTGGGAGTTCTGAGC
Downstream 100 bases:
>100_bases GGATCTATCTTTTTGACAAGGCGACGAATTCCCCCTGCCAGCCCTCTGGCGGGGGGATTTCTTTATAGGCGGCGATCCGG TCGAGGTAGAGCTGCGCCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MPFKTFKIAAVAALALAAPFAAPVAAQNIGTVASTEPTLRGTPPGAGTRPLTLGTGVVQNETVAASASGRGQILFIDQST LSLAPNTTIVLDQFVFNPNGSGQMGLSMTEGALRFIGGTLSRGQEATVTTPTATIGIRGSSALIVHLNGQTVAVFLAGER LCLYTAGGQRACTSRRGGVLTVEGYQGRVNPDYLAQILSLIDGAPQGGSGSGLGSGVGGPNPSDRGPVSTGGEEFDPEIF DDDFREDDLFLGLPEQQMEMEEVILDDAVMDPMPTTPTNCDPQDPAPGCFGTPTFP
Sequences:
>Translated_296_residues MPFKTFKIAAVAALALAAPFAAPVAAQNIGTVASTEPTLRGTPPGAGTRPLTLGTGVVQNETVAASASGRGQILFIDQST LSLAPNTTIVLDQFVFNPNGSGQMGLSMTEGALRFIGGTLSRGQEATVTTPTATIGIRGSSALIVHLNGQTVAVFLAGER LCLYTAGGQRACTSRRGGVLTVEGYQGRVNPDYLAQILSLIDGAPQGGSGSGLGSGVGGPNPSDRGPVSTGGEEFDPEIF DDDFREDDLFLGLPEQQMEMEEVILDDAVMDPMPTTPTNCDPQDPAPGCFGTPTFP >Mature_295_residues PFKTFKIAAVAALALAAPFAAPVAAQNIGTVASTEPTLRGTPPGAGTRPLTLGTGVVQNETVAASASGRGQILFIDQSTL SLAPNTTIVLDQFVFNPNGSGQMGLSMTEGALRFIGGTLSRGQEATVTTPTATIGIRGSSALIVHLNGQTVAVFLAGERL CLYTAGGQRACTSRRGGVLTVEGYQGRVNPDYLAQILSLIDGAPQGGSGSGLGSGVGGPNPSDRGPVSTGGEEFDPEIFD DDFREDDLFLGLPEQQMEMEEVILDDAVMDPMPTTPTNCDPQDPAPGCFGTPTFP
Specific function: Unknown
COG id: COG4254
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30402; Mature: 30270
Theoretical pI: Translated: 4.07; Mature: 4.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFKTFKIAAVAALALAAPFAAPVAAQNIGTVASTEPTLRGTPPGAGTRPLTLGTGVVQN CCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC ETVAASASGRGQILFIDQSTLSLAPNTTIVLDQFVFNPNGSGQMGLSMTEGALRFIGGTL CEEEECCCCCEEEEEEECCCEEECCCCEEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHH SRGQEATVTTPTATIGIRGSSALIVHLNGQTVAVFLAGERLCLYTAGGQRACTSRRGGVL CCCCCEEEECCCEEEEECCCCEEEEEECCCEEEEEEECCEEEEEECCCCHHHHCCCCCEE TVEGYQGRVNPDYLAQILSLIDGAPQGGSGSGLGSGVGGPNPSDRGPVSTGGEEFDPEIF EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DDDFREDDLFLGLPEQQMEMEEVILDDAVMDPMPTTPTNCDPQDPAPGCFGTPTFP CCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PFKTFKIAAVAALALAAPFAAPVAAQNIGTVASTEPTLRGTPPGAGTRPLTLGTGVVQN CCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC ETVAASASGRGQILFIDQSTLSLAPNTTIVLDQFVFNPNGSGQMGLSMTEGALRFIGGTL CEEEECCCCCEEEEEEECCCEEECCCCEEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHH SRGQEATVTTPTATIGIRGSSALIVHLNGQTVAVFLAGERLCLYTAGGQRACTSRRGGVL CCCCCEEEECCCEEEEECCCCEEEEEECCCEEEEEEECCEEEEEECCCCHHHHCCCCCEE TVEGYQGRVNPDYLAQILSLIDGAPQGGSGSGLGSGVGGPNPSDRGPVSTGGEEFDPEIF EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DDDFREDDLFLGLPEQQMEMEEVILDDAVMDPMPTTPTNCDPQDPAPGCFGTPTFP CCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA