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The map label for this gene is ycdK [C]

Identifier: 89054161

GI number: 89054161

Start: 1653914

End: 1654309

Strand: Direct

Name: ycdK [C]

Synonym: Jann_1670

Alternate gene names: 89054161

Gene position: 1653914-1654309 (Clockwise)

Preceding gene: 89054160

Following gene: 89054162

Centisome position: 38.3

GC content: 59.85

Gene sequence:

>396_bases
ATGACGCGTCAGAACGTCTCTTCGGGGTCCTATCTGGAACCTCAGATCGGATTTTCGAGGGCCGTGCGCATTGGCGATAT
GATCGCGGTGGGGGGCACGGCGCCCATCGCGGAGGGTGGCGGCACGGCGTGTGTCGGCGATGTGTATGGCCAGACAAAAC
GGTGCCTGGAGATCGCGTTAACGGCGTTAACCTCTGCTGGTGGTCGCGCGGAGGATGTGATCCGCACCCGCATAATTCTG
ACTGATATCAAGACATTCGCAGAGGCCGCCCGCGCCCATGCCGAAGTGTTCACCGACATTCGCCCTGTCACCACCGTGAT
GGCAGTCACCGCTTTCGTTGATCCCGACTGGTTGGTCGAGATCGAACTCGACGCCGTTTCAAAGGACCCATCATGA

Upstream 100 bases:

>100_bases
GCGTGGCGCGGAAACCAAAATGCGGCGCCTGTCTGATCCGTGATCTATGCGTGTTCGAGGACAAGACGCCCGATCCGCTG
CCGAAAAAAGGAGCGCGCCC

Downstream 100 bases:

>100_bases
CCCAAACCTACGACCTGGTCGGCATCGGCAATGCCGTCGTCGATGTCATCTCCCATGCCGACGACAGCTTCCTGGACAAT
ATGGGCATCCAGAAGGGCAT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MTRQNVSSGSYLEPQIGFSRAVRIGDMIAVGGTAPIAEGGGTACVGDVYGQTKRCLEIALTALTSAGGRAEDVIRTRIIL
TDIKTFAEAARAHAEVFTDIRPVTTVMAVTAFVDPDWLVEIELDAVSKDPS

Sequences:

>Translated_131_residues
MTRQNVSSGSYLEPQIGFSRAVRIGDMIAVGGTAPIAEGGGTACVGDVYGQTKRCLEIALTALTSAGGRAEDVIRTRIIL
TDIKTFAEAARAHAEVFTDIRPVTTVMAVTAFVDPDWLVEIELDAVSKDPS
>Mature_130_residues
TRQNVSSGSYLEPQIGFSRAVRIGDMIAVGGTAPIAEGGGTACVGDVYGQTKRCLEIALTALTSAGGRAEDVIRTRIILT
DIKTFAEAARAHAEVFTDIRPVTTVMAVTAFVDPDWLVEIELDAVSKDPS

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13842; Mature: 13711

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRQNVSSGSYLEPQIGFSRAVRIGDMIAVGGTAPIAEGGGTACVGDVYGQTKRCLEIAL
CCCCCCCCCCCCCCCCCHHHHHHHCCEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHH
TALTSAGGRAEDVIRTRIILTDIKTFAEAARAHAEVFTDIRPVTTVMAVTAFVDPDWLVE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
IELDAVSKDPS
EEEECCCCCCC
>Mature Secondary Structure 
TRQNVSSGSYLEPQIGFSRAVRIGDMIAVGGTAPIAEGGGTACVGDVYGQTKRCLEIAL
CCCCCCCCCCCCCCCCHHHHHHHCCEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHH
TALTSAGGRAEDVIRTRIILTDIKTFAEAARAHAEVFTDIRPVTTVMAVTAFVDPDWLVE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
IELDAVSKDPS
EEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953; 2199329 [H]