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The map label for this gene is hdfR [H]

Identifier: 89054086

GI number: 89054086

Start: 1577340

End: 1578185

Strand: Reverse

Name: hdfR [H]

Synonym: Jann_1595

Alternate gene names: 89054086

Gene position: 1578185-1577340 (Counterclockwise)

Preceding gene: 89054102

Following gene: 89054084

Centisome position: 36.55

GC content: 64.78

Gene sequence:

>846_bases
ATGCAGATTGACCAGATCGAAACCTTCCTCGACCTTCTGGAGACCCAAAGCTTCAACCGCACCGCGGACCGGCTGGACGT
GACTCAATCCACCGTGTCGGGCCGGGTCAAGGCGCTGGAAAAGGCCCTGGGCGAGCGGTTGTTTGAACGCTCCCGCTCCG
GCACCCAGCCCACCACGGCGGCGCTTCGGTTTGAAACCCATGCCCGCGTGTTGCGCCGAGCCTGGGCCGATGGGCAGGCC
GATGTGAAGCCCTTTGGCACCGCCGTCATGCTGCGCATTGGAATACAGCATGATCTGATCGACAATCACGTGGCCGATTG
GCTGGCGGCCCTCAGGCAAGCCCTGCCCGAATGCGGCTTCTATGTGGACGGCGATTATTCCACCCAGATGTGCCGGGATC
TGGAGACCGGCGCGCTGGATCTGGGCGTGGTGTTCACCCCCCGCCCGTCGCCGGATCTCTACTTTGAAAGTATGGGAGAG
GTCACCTACCAGATGGTATCCACCGCCCAGACCAGCCTGCCCCAGATCGATCCCACCAACTACATCCTGCCCAACTACGC
GCCCGCCTTCGCCCAAACCCACGCGGCCCTGCTGCCGGGGCTGAGCCTTGGGTCCGTGTCCAGCGGACAGGCCGCGGCGG
TGCGGGGCCTGCTGATCGCCCTTGGCGGCACAACCTATCTGCCAACCGAAATGGTCAGCGCCCTGATCACAGAGGGCATC
GCTCACCACGTCCCCGGCGCGCCCGACATCACCCAGCCCGTCTTTGTGGCGATGCATCTGCGCAACCGCCACCGCGCAGG
CTACCGACGCATGGCAAATGTGCTGCGGGACCGGGTCGGAACGTAG

Upstream 100 bases:

>100_bases
CTGTGCCGCCCCTTCCTCGTTCCGAAAATATCCCGGGGGCATGCGATCTTTTTGATACAAAAAGACGCAAGGGGGGCTGG
CCCCCAAGAAGCAACGTCCC

Downstream 100 bases:

>100_bases
CGCAGGCTTAGATCCCACGCGCGGCGCGCCGATCTCTTGCACCCATCACAAGCCTGATCCCGGGGGGCCAGGGGGCCATG
CCCCCAAATGGGGTGGGTGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: H-NS-dependent flhDC regulator [H]

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MQIDQIETFLDLLETQSFNRTADRLDVTQSTVSGRVKALEKALGERLFERSRSGTQPTTAALRFETHARVLRRAWADGQA
DVKPFGTAVMLRIGIQHDLIDNHVADWLAALRQALPECGFYVDGDYSTQMCRDLETGALDLGVVFTPRPSPDLYFESMGE
VTYQMVSTAQTSLPQIDPTNYILPNYAPAFAQTHAALLPGLSLGSVSSGQAAAVRGLLIALGGTTYLPTEMVSALITEGI
AHHVPGAPDITQPVFVAMHLRNRHRAGYRRMANVLRDRVGT

Sequences:

>Translated_281_residues
MQIDQIETFLDLLETQSFNRTADRLDVTQSTVSGRVKALEKALGERLFERSRSGTQPTTAALRFETHARVLRRAWADGQA
DVKPFGTAVMLRIGIQHDLIDNHVADWLAALRQALPECGFYVDGDYSTQMCRDLETGALDLGVVFTPRPSPDLYFESMGE
VTYQMVSTAQTSLPQIDPTNYILPNYAPAFAQTHAALLPGLSLGSVSSGQAAAVRGLLIALGGTTYLPTEMVSALITEGI
AHHVPGAPDITQPVFVAMHLRNRHRAGYRRMANVLRDRVGT
>Mature_281_residues
MQIDQIETFLDLLETQSFNRTADRLDVTQSTVSGRVKALEKALGERLFERSRSGTQPTTAALRFETHARVLRRAWADGQA
DVKPFGTAVMLRIGIQHDLIDNHVADWLAALRQALPECGFYVDGDYSTQMCRDLETGALDLGVVFTPRPSPDLYFESMGE
VTYQMVSTAQTSLPQIDPTNYILPNYAPAFAQTHAALLPGLSLGSVSSGQAAAVRGLLIALGGTTYLPTEMVSALITEGI
AHHVPGAPDITQPVFVAMHLRNRHRAGYRRMANVLRDRVGT

Specific function: Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994962, Length=266, Percent_Identity=26.3157894736842, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020890
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30780; Mature: 30780

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIDQIETFLDLLETQSFNRTADRLDVTQSTVSGRVKALEKALGERLFERSRSGTQPTTA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ALRFETHARVLRRAWADGQADVKPFGTAVMLRIGIQHDLIDNHVADWLAALRQALPECGF
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
YVDGDYSTQMCRDLETGALDLGVVFTPRPSPDLYFESMGEVTYQMVSTAQTSLPQIDPTN
EECCCCHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
YILPNYAPAFAQTHAALLPGLSLGSVSSGQAAAVRGLLIALGGTTYLPTEMVSALITEGI
EECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AHHVPGAPDITQPVFVAMHLRNRHRAGYRRMANVLRDRVGT
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQIDQIETFLDLLETQSFNRTADRLDVTQSTVSGRVKALEKALGERLFERSRSGTQPTTA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ALRFETHARVLRRAWADGQADVKPFGTAVMLRIGIQHDLIDNHVADWLAALRQALPECGF
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
YVDGDYSTQMCRDLETGALDLGVVFTPRPSPDLYFESMGEVTYQMVSTAQTSLPQIDPTN
EECCCCHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
YILPNYAPAFAQTHAALLPGLSLGSVSSGQAAAVRGLLIALGGTTYLPTEMVSALITEGI
EECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AHHVPGAPDITQPVFVAMHLRNRHRAGYRRMANVLRDRVGT
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA