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The map label for this gene is soxS [C]

Identifier: 89054046

GI number: 89054046

Start: 1525765

End: 1526922

Strand: Reverse

Name: soxS [C]

Synonym: Jann_1555

Alternate gene names: 89054046

Gene position: 1526922-1525765 (Counterclockwise)

Preceding gene: 89054047

Following gene: 89054043

Centisome position: 35.36

GC content: 54.4

Gene sequence:

>1158_bases
ATGACATTGGATATCGCCATCAGCAGCGTCACGGCAGGCATTTGCCTGTTTTGCGCGCATCTCCTGCTGCTCAGGCGGCG
AGACACTGGGGTTTATCTGCCCCTTGCCTTGTTATTCCTGTTCCAGGGGATCTCTACCGGCGTTGCCGCACTGGCCGGAA
CATATGATCCGGATAGTTTGGGCATCCTTTTCCGCATCAGCATCATTGTCGGTGGCCTGGAAATCACCCTTCCGTTTCTT
CTTTGGGTCTATGTGCGGGCGCTGACAACAGAAGGCCAAACGGAACGTATCCCGAAATTGCCGTATCACGTGATCCCGAT
TGTTCTGGTTGTCCTCGCATTCTGGTCGCTCTTGTTTCTTCCAGACGGATTTGCAGACACCGAATTGGAAGATGATGACC
CGCGTTTGTTGGGATTTGTCGCTATCGCGCTGGCCGTTATGCTTGCGGATATTGCGTTCAAAGCGATGGTAGCCACTTAC
ATCTACCTGATCATCCGCCGCCTCATGGCCTATCGCACGCGTCTAAAGGATGTGTTCGCCAGCACCGAAAACCGAGAACT
AACTTGGATATGGGTGATCTTGATTTGCATGGCGGTCTACCTCAGCGTGAGTATCGCCTTTACCGCGTCGATTGTGTCCG
GTGTTTTTGCCGAAGAAACCCAAGAAACGTGGTTGCCGACGCTGAACGGTATCGCGCTTCTTGGATTGTTCTGGGCCCTT
GGCGTCTGGGGGTTGCGGCAGCGTCCCGGCCTGACGCGGCAGCCCGTCGTCGCCGCCCCGGAGCCCGATGATCCCAAGCC
GCGAAAATATGAGAAATCCGCGCTTGATGACGAACGGCTGCAACGCATTGCCCGGAAGGTTGAGGCGGCGATGGCCGAAG
ACACCCTCTACCGTGATCCCAACTTATCACTTTGGGATCTGGCAAAGCACATTGGCGTCACGTCTCACTATGTGTCTCAA
GCGCTGAACACCCATCTGAACAAGAGTTTCTTTGACCTGGTGAATGGATGGCGGATCAAGGATGCCATCGAACAGTTGAC
CACGACAGATGAGACCATCTTGACGATTGCCTATGACGTCGGCTTCAACTCCCGCTCCGCATTTTATAAAGCGTTCAAAC
GCGAAACAGGGCGAACCCCTTCTGACCTGAGAAACTAG

Upstream 100 bases:

>100_bases
ATGGCTGCCACTCTGTCCCGAAACCCGACGCTCGGGATTGCACACCCGCACCGCGCCGGGCACATCACATCATCGACACG
AAGGGTTAAACGGCTGCCGC

Downstream 100 bases:

>100_bases
CGTAGGTGTGCGTCCGTGACCCCGAACACCTCTGAACGTCGTGGCCTGTCTACTCAATCCGCAAAATTTGAGCTGGGTAT
CTAATGTCGTTCTGTGGCCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; AraC/XylS Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family Protein; Response Regulator Receiver Protein; RhaRS Operon Positive Regulator; Transcriptional Regulator AraC/XylS Family; Regulatory Helix-Turn-Helix Protein AraC Family; AraC Family Transcription Regulator; Helix-Turn-Helix AraC Type

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MTLDIAISSVTAGICLFCAHLLLLRRRDTGVYLPLALLFLFQGISTGVAALAGTYDPDSLGILFRISIIVGGLEITLPFL
LWVYVRALTTEGQTERIPKLPYHVIPIVLVVLAFWSLLFLPDGFADTELEDDDPRLLGFVAIALAVMLADIAFKAMVATY
IYLIIRRLMAYRTRLKDVFASTENRELTWIWVILICMAVYLSVSIAFTASIVSGVFAEETQETWLPTLNGIALLGLFWAL
GVWGLRQRPGLTRQPVVAAPEPDDPKPRKYEKSALDDERLQRIARKVEAAMAEDTLYRDPNLSLWDLAKHIGVTSHYVSQ
ALNTHLNKSFFDLVNGWRIKDAIEQLTTTDETILTIAYDVGFNSRSAFYKAFKRETGRTPSDLRN

Sequences:

>Translated_385_residues
MTLDIAISSVTAGICLFCAHLLLLRRRDTGVYLPLALLFLFQGISTGVAALAGTYDPDSLGILFRISIIVGGLEITLPFL
LWVYVRALTTEGQTERIPKLPYHVIPIVLVVLAFWSLLFLPDGFADTELEDDDPRLLGFVAIALAVMLADIAFKAMVATY
IYLIIRRLMAYRTRLKDVFASTENRELTWIWVILICMAVYLSVSIAFTASIVSGVFAEETQETWLPTLNGIALLGLFWAL
GVWGLRQRPGLTRQPVVAAPEPDDPKPRKYEKSALDDERLQRIARKVEAAMAEDTLYRDPNLSLWDLAKHIGVTSHYVSQ
ALNTHLNKSFFDLVNGWRIKDAIEQLTTTDETILTIAYDVGFNSRSAFYKAFKRETGRTPSDLRN
>Mature_384_residues
TLDIAISSVTAGICLFCAHLLLLRRRDTGVYLPLALLFLFQGISTGVAALAGTYDPDSLGILFRISIIVGGLEITLPFLL
WVYVRALTTEGQTERIPKLPYHVIPIVLVVLAFWSLLFLPDGFADTELEDDDPRLLGFVAIALAVMLADIAFKAMVATYI
YLIIRRLMAYRTRLKDVFASTENRELTWIWVILICMAVYLSVSIAFTASIVSGVFAEETQETWLPTLNGIALLGLFWALG
VWGLRQRPGLTRQPVVAAPEPDDPKPRKYEKSALDDERLQRIARKVEAAMAEDTLYRDPNLSLWDLAKHIGVTSHYVSQA
LNTHLNKSFFDLVNGWRIKDAIEQLTTTDETILTIAYDVGFNSRSAFYKAFKRETGRTPSDLRN

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43178; Mature: 43047

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDIAISSVTAGICLFCAHLLLLRRRDTGVYLPLALLFLFQGISTGVAALAGTYDPDSL
CEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
GILFRISIIVGGLEITLPFLLWVYVRALTTEGQTERIPKLPYHVIPIVLVVLAFWSLLFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
PDGFADTELEDDDPRLLGFVAIALAVMLADIAFKAMVATYIYLIIRRLMAYRTRLKDVFA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STENRELTWIWVILICMAVYLSVSIAFTASIVSGVFAEETQETWLPTLNGIALLGLFWAL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
GVWGLRQRPGLTRQPVVAAPEPDDPKPRKYEKSALDDERLQRIARKVEAAMAEDTLYRDP
HHCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
NLSLWDLAKHIGVTSHYVSQALNTHLNKSFFDLVNGWRIKDAIEQLTTTDETILTIAYDV
CCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEEC
GFNSRSAFYKAFKRETGRTPSDLRN
CCCCHHHHHHHHHHHCCCCCHHHCC
>Mature Secondary Structure 
TLDIAISSVTAGICLFCAHLLLLRRRDTGVYLPLALLFLFQGISTGVAALAGTYDPDSL
EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
GILFRISIIVGGLEITLPFLLWVYVRALTTEGQTERIPKLPYHVIPIVLVVLAFWSLLFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
PDGFADTELEDDDPRLLGFVAIALAVMLADIAFKAMVATYIYLIIRRLMAYRTRLKDVFA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STENRELTWIWVILICMAVYLSVSIAFTASIVSGVFAEETQETWLPTLNGIALLGLFWAL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
GVWGLRQRPGLTRQPVVAAPEPDDPKPRKYEKSALDDERLQRIARKVEAAMAEDTLYRDP
HHCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
NLSLWDLAKHIGVTSHYVSQALNTHLNKSFFDLVNGWRIKDAIEQLTTTDETILTIAYDV
CCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEEC
GFNSRSAFYKAFKRETGRTPSDLRN
CCCCHHHHHHHHHHHCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA