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The map label for this gene is ycjZ [C]

Identifier: 89054043

GI number: 89054043

Start: 1522661

End: 1523524

Strand: Reverse

Name: ycjZ [C]

Synonym: Jann_1552

Alternate gene names: 89054043

Gene position: 1523524-1522661 (Counterclockwise)

Preceding gene: 89054046

Following gene: 89054040

Centisome position: 35.28

GC content: 58.33

Gene sequence:

>864_bases
ATGCGACCAAGCGAGCGACTTGATTGGGATGATCTGAAACTGATCCTCGCCTTGGCCGAGGCGGGGTATGTCACCCGTGC
TGCCGAAAAACTGCGCGTTGACCAGACAACGATCCCGCGCCGGATCAGGCGCCTGGAGGATCGGCTTGATCTGAAACTGA
TTGAGCGCATCAAGGGGGGCGTTGTTCTGACGGCCGCAGCGGATGAATTGGTGCGGATCGCCCGTGAGGTCGAAACGGGC
TTGGACGACGCCTTGGCCGCACCGCTGGAAGCCCCGCCAGTGACTGGCACGGTAAAGTTGTCCGGCACGGATTTCATGTT
GGATCTGCTGACCGATGCGCTGGTGGATCTGCAGAAAAAGTTCCCTGGATTGATACTCGAGCTCAAGCCGACCAATGACT
ATCTCAGCCTTGATCGACGTGAAACGGACGTCGCTATCCGACAGGCCGAAAGCCCGCATGATGGGCTAGTCGGACGGCGA
CTGCCATTGATCCCGCTAGGCGTATTTGCGATGCCAGACTTCGCCGATAATGCGCCCGGAAAGCCGTGGCTGTCCTGGAC
CCTACCGCGCGGCGTCAGCGAAATTGATGATATGATCCTGAAGCACGACACCGATGGGCGTATTGTGGCCCGCGTGGACA
GCATGATGGCACAGGCCCGTCTGTGTGCACGTGGCATGGGATGCGCCTTTCTGCCAATAAACTATGTCTCAGCACATCCC
GAACTGTCAGACCTCGTCTTGATTGCAGACGGCCCATCTTACCCTGCATGGGTCGTGACACACGAGGAACTCCGCCACGT
TCCGAGAGTGCGTGAGGTTATGGCTGCCATCGTAGAAGGATTAGACAGCTATCACGCGTCGTGA

Upstream 100 bases:

>100_bases
ATTTTCCTTTGTTGTGTTGGTGTCGACACCATGCGTGTTCCGCGATATTGCCTCAATGCAGGAATGTGCAGGATGACCTG
CGCAAATGCAGGAGGCGTCG

Downstream 100 bases:

>100_bases
ACCCGACGGCGGCAACGACAACCGTCGCGGGTTTGACCCCTCATTGGTCGACCGGATCACGCCATTTGATATATGTCCTA
AAGCGGCCAGCGGTGCACTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LysR Family; Transcriptional Regulator; Transcriptional Regulator Protein; LysR Family Regulatory Protein; Transcriptional Regulator LysR Family Protein; Transcriptional Regulatory Protein; Transcription Regulator Protein; LysR Family Transcription Regulator Protein; Regulatory Protein LysR; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein Lysr Family; Lysr-Family Transcriptional Regulator; HTH-Type Transcriptional Regulator LysR-Family; LysR Family Regulatory Helix-Turn-Helix Protein; LysR Family Transcriptional Regulator Protein; LysR-Family Transcriptional Regulator; Transcriptional Regulators Lysr Family; Helix-Turn-Helix Fis-Type; Transcription Regulator Protein Lysr; Transcriptional Regulator Of LysR Family; Transcriptional Regulator Transcription Regulator Protein; Transcriptional Regulator Protein LysR Family

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MRPSERLDWDDLKLILALAEAGYVTRAAEKLRVDQTTIPRRIRRLEDRLDLKLIERIKGGVVLTAAADELVRIAREVETG
LDDALAAPLEAPPVTGTVKLSGTDFMLDLLTDALVDLQKKFPGLILELKPTNDYLSLDRRETDVAIRQAESPHDGLVGRR
LPLIPLGVFAMPDFADNAPGKPWLSWTLPRGVSEIDDMILKHDTDGRIVARVDSMMAQARLCARGMGCAFLPINYVSAHP
ELSDLVLIADGPSYPAWVVTHEELRHVPRVREVMAAIVEGLDSYHAS

Sequences:

>Translated_287_residues
MRPSERLDWDDLKLILALAEAGYVTRAAEKLRVDQTTIPRRIRRLEDRLDLKLIERIKGGVVLTAAADELVRIAREVETG
LDDALAAPLEAPPVTGTVKLSGTDFMLDLLTDALVDLQKKFPGLILELKPTNDYLSLDRRETDVAIRQAESPHDGLVGRR
LPLIPLGVFAMPDFADNAPGKPWLSWTLPRGVSEIDDMILKHDTDGRIVARVDSMMAQARLCARGMGCAFLPINYVSAHP
ELSDLVLIADGPSYPAWVVTHEELRHVPRVREVMAAIVEGLDSYHAS
>Mature_287_residues
MRPSERLDWDDLKLILALAEAGYVTRAAEKLRVDQTTIPRRIRRLEDRLDLKLIERIKGGVVLTAAADELVRIAREVETG
LDDALAAPLEAPPVTGTVKLSGTDFMLDLLTDALVDLQKKFPGLILELKPTNDYLSLDRRETDVAIRQAESPHDGLVGRR
LPLIPLGVFAMPDFADNAPGKPWLSWTLPRGVSEIDDMILKHDTDGRIVARVDSMMAQARLCARGMGCAFLPINYVSAHP
ELSDLVLIADGPSYPAWVVTHEELRHVPRVREVMAAIVEGLDSYHAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31778; Mature: 31778

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPSERLDWDDLKLILALAEAGYVTRAAEKLRVDQTTIPRRIRRLEDRLDLKLIERIKGG
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
VVLTAAADELVRIAREVETGLDDALAAPLEAPPVTGTVKLSGTDFMLDLLTDALVDLQKK
EEEEECHHHHHHHHHHHHHCHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
FPGLILELKPTNDYLSLDRRETDVAIRQAESPHDGLVGRRLPLIPLGVFAMPDFADNAPG
CCCEEEEEECCCCHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEHHHCCCCCCCCCCC
KPWLSWTLPRGVSEIDDMILKHDTDGRIVARVDSMMAQARLCARGMGCAFLPINYVSAHP
CCCEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCC
ELSDLVLIADGPSYPAWVVTHEELRHVPRVREVMAAIVEGLDSYHAS
CCCCEEEEECCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRPSERLDWDDLKLILALAEAGYVTRAAEKLRVDQTTIPRRIRRLEDRLDLKLIERIKGG
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
VVLTAAADELVRIAREVETGLDDALAAPLEAPPVTGTVKLSGTDFMLDLLTDALVDLQKK
EEEEECHHHHHHHHHHHHHCHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
FPGLILELKPTNDYLSLDRRETDVAIRQAESPHDGLVGRRLPLIPLGVFAMPDFADNAPG
CCCEEEEEECCCCHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEHHHCCCCCCCCCCC
KPWLSWTLPRGVSEIDDMILKHDTDGRIVARVDSMMAQARLCARGMGCAFLPINYVSAHP
CCCEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCC
ELSDLVLIADGPSYPAWVVTHEELRHVPRVREVMAAIVEGLDSYHAS
CCCCEEEEECCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA