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The map label for this gene is xerD [H]

Identifier: 89054027

GI number: 89054027

Start: 1507236

End: 1507841

Strand: Direct

Name: xerD [H]

Synonym: Jann_1536

Alternate gene names: 89054027

Gene position: 1507236-1507841 (Clockwise)

Preceding gene: 89054026

Following gene: 89054028

Centisome position: 34.91

GC content: 61.22

Gene sequence:

>606_bases
ATGAGTGAAATGCGCCTCTACGACGACCATGGAAACCGCCTCTATCTGAATGCAGATGAGAGGGCGGCGTTCTTGGCTGC
GGCCCGTCAGAGGCCAGCCCGCGACCGCACCCTTTGCGAAACCCTCCATTTCACAGGCTGCCGTCCGTCCGAGCTGATCG
AGATCACTGCCGCCCGCGTCGATCTATCCGGTGGCACCTTGGCGATTCGGTCGCTGAAGAAGCGACGGAATGGGGCAGGG
GAGGTCAGGGTGGTCTTCAGGACGGTTCCTGTGCCACCTGACTACCTGGACACGCTCAACACGGCCCACGGCATCCGTGA
GGCACAGAAATCGCCCAAACGGGCAGGGGAGCCCATCTGGCCGATCAGCCGTGTGCATGTTTGGCGGATCGTCAAGGGCG
TTATGATCGAGGCGGGCCTCCCCGATGCACCTCAGCGAACGCCAAAGGGTTTACGCCATGGCTACGGGATCAATGCAATC
GTGAACGGCATTCCGCTCCACATGCTGCAAAAGTGGCTTGGCCACGCGCAGCTTTCCACGACGACGATCTACGCCGATGC
CATCGGCAAGGAAGAGCAGGACCTCGCGTCTAGGATGTGGGGATAG

Upstream 100 bases:

>100_bases
TCGGTTGGAGTAGGGGTGTAACTGAAGTACCCACTGTTTCTAGGGAGAATCTCCGCGCCAATGATTCACAGAGTAACACT
ATTCGGGTATAGTGTTACAT

Downstream 100 bases:

>100_bases
GGCGCATGCACCTCAAACGGATCGAACCTGAGGCGAACTTGAACCGCTTCTACCGCATGGAGATCGTGCCAGGTCTCTTC
GGAGACTGGGGCCTGGTCCG

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MSEMRLYDDHGNRLYLNADERAAFLAAARQRPARDRTLCETLHFTGCRPSELIEITAARVDLSGGTLAIRSLKKRRNGAG
EVRVVFRTVPVPPDYLDTLNTAHGIREAQKSPKRAGEPIWPISRVHVWRIVKGVMIEAGLPDAPQRTPKGLRHGYGINAI
VNGIPLHMLQKWLGHAQLSTTTIYADAIGKEEQDLASRMWG

Sequences:

>Translated_201_residues
MSEMRLYDDHGNRLYLNADERAAFLAAARQRPARDRTLCETLHFTGCRPSELIEITAARVDLSGGTLAIRSLKKRRNGAG
EVRVVFRTVPVPPDYLDTLNTAHGIREAQKSPKRAGEPIWPISRVHVWRIVKGVMIEAGLPDAPQRTPKGLRHGYGINAI
VNGIPLHMLQKWLGHAQLSTTTIYADAIGKEEQDLASRMWG
>Mature_200_residues
SEMRLYDDHGNRLYLNADERAAFLAAARQRPARDRTLCETLHFTGCRPSELIEITAARVDLSGGTLAIRSLKKRRNGAGE
VRVVFRTVPVPPDYLDTLNTAHGIREAQKSPKRAGEPIWPISRVHVWRIVKGVMIEAGLPDAPQRTPKGLRHGYGINAIV
NGIPLHMLQKWLGHAQLSTTTIYADAIGKEEQDLASRMWG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 22422; Mature: 22291

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEMRLYDDHGNRLYLNADERAAFLAAARQRPARDRTLCETLHFTGCRPSELIEITAARV
CCCCEEEECCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHEEHHHEE
DLSGGTLAIRSLKKRRNGAGEVRVVFRTVPVPPDYLDTLNTAHGIREAQKSPKRAGEPIW
ECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCC
PISRVHVWRIVKGVMIEAGLPDAPQRTPKGLRHGYGINAIVNGIPLHMLQKWLGHAQLST
CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHCCCCHHHHHHHHCCCHHHH
TTIYADAIGKEEQDLASRMWG
HEEEHHHCCCCHHHHHHHCCC
>Mature Secondary Structure 
SEMRLYDDHGNRLYLNADERAAFLAAARQRPARDRTLCETLHFTGCRPSELIEITAARV
CCCEEEECCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHEEHHHEE
DLSGGTLAIRSLKKRRNGAGEVRVVFRTVPVPPDYLDTLNTAHGIREAQKSPKRAGEPIW
ECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCC
PISRVHVWRIVKGVMIEAGLPDAPQRTPKGLRHGYGINAIVNGIPLHMLQKWLGHAQLST
CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHCCCCHHHHHHHHCCCHHHH
TTIYADAIGKEEQDLASRMWG
HEEEHHHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA