Click here to switch to the map view.

The map label for this gene is ocd [H]

Identifier: 89054021

GI number: 89054021

Start: 1499964

End: 1500908

Strand: Direct

Name: ocd [H]

Synonym: Jann_1530

Alternate gene names: 89054021

Gene position: 1499964-1500908 (Clockwise)

Preceding gene: 89054020

Following gene: 89054023

Centisome position: 34.74

GC content: 62.75

Gene sequence:

>945_bases
GTGGCGGATATGAACATTCCCTACCTGTCGCAGGACGATTTGATCGGGCTGGGGCTGAGCACGACACAGATCATCGACAG
CATCGACGACGCCATTCGCGGCAGCGTGACCGGCACGGTCTGGTCCGCGCCCAAGGCGGTCATCACGCCCCCCGATGACC
CGCGCTACATGATGGCGGCCCTTGCGGCGATGGATAACCCGTCGCTGCTGGCAGTCAAAACTGTTGTCCTGAACCCCGAA
AATACGGCTAACGGATTGCCGCAGATCAACGGCCTCGTGACCATGCTCGACAGTGTCACCGGACTGCCTGTGGCCGTGCT
GGACGGCAATTGGATCACCGAGGTGCGCACCGCAGGCCTCAGCGCGCTTGCCGCGAAATATATGGCCGATCCGGGTGCCA
AAACCATCGGCTTTGTGGGCTGTGGCGCGCAGGCACGAAGCCACCTTGATGCCTTCGCGGACCTCTTTGATCTGGAGCAT
ATGGTCTATTTCGGGCGGGGTCAGGCCAATCAGGATCGTCTCGCCGCACTGGCCCACGCGCGCGGGCTGACCACGGCGGC
CTGTGCCTCGGGGCAAGAGGTTGTGCAGTCGTGCGACCTGCTGGTGACGACTGTCACGCACACGGGAGGTGCGGCTCCGT
TCCTTGATGCTTCTGGCATGAAAGCGGGATCCTTTGCGGCGGTCGTGGATCTGGCCGCCCCATGGAAGCGCGACACTTTC
GGGGCGCTGGACTGCGTGGCAATTGATGATCTCACACAAGAGGCGGCGCTGCCCAACAAGCTGTGCGATCCGGCCCTGAT
CCACGGTGACCTGACGGGTTTGGTCACCGGGCAATTACAGGGGCGCAAGGGCCAAAGTGATCGAACGGCCTTCGTCTTTC
GAGGGCACGCCCTCGGCGACTTGGCGTTGTCCGCGCTGGCCATCGAAACGTATCGAACGCTCTAA

Upstream 100 bases:

>100_bases
GGATCACCGGCACGCACCAACACATGCTGGACCCCGATGATCCGTGGCCCGAAGGCTATCGCCTCCGCGATACATGGCCC
GACCTGAAGGGGCACACATA

Downstream 100 bases:

>100_bases
TTGGTCTGTGATATTATGTGAAGCGGCTCATTCGCAAGCTCGACCTAAGTGGTGAACCAGACGTTCGCTGCGGCGCAGAA
GGTAAGCAACAAGGCTCAAT

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD [H]

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MADMNIPYLSQDDLIGLGLSTTQIIDSIDDAIRGSVTGTVWSAPKAVITPPDDPRYMMAALAAMDNPSLLAVKTVVLNPE
NTANGLPQINGLVTMLDSVTGLPVAVLDGNWITEVRTAGLSALAAKYMADPGAKTIGFVGCGAQARSHLDAFADLFDLEH
MVYFGRGQANQDRLAALAHARGLTTAACASGQEVVQSCDLLVTTVTHTGGAAPFLDASGMKAGSFAAVVDLAAPWKRDTF
GALDCVAIDDLTQEAALPNKLCDPALIHGDLTGLVTGQLQGRKGQSDRTAFVFRGHALGDLALSALAIETYRTL

Sequences:

>Translated_314_residues
MADMNIPYLSQDDLIGLGLSTTQIIDSIDDAIRGSVTGTVWSAPKAVITPPDDPRYMMAALAAMDNPSLLAVKTVVLNPE
NTANGLPQINGLVTMLDSVTGLPVAVLDGNWITEVRTAGLSALAAKYMADPGAKTIGFVGCGAQARSHLDAFADLFDLEH
MVYFGRGQANQDRLAALAHARGLTTAACASGQEVVQSCDLLVTTVTHTGGAAPFLDASGMKAGSFAAVVDLAAPWKRDTF
GALDCVAIDDLTQEAALPNKLCDPALIHGDLTGLVTGQLQGRKGQSDRTAFVFRGHALGDLALSALAIETYRTL
>Mature_313_residues
ADMNIPYLSQDDLIGLGLSTTQIIDSIDDAIRGSVTGTVWSAPKAVITPPDDPRYMMAALAAMDNPSLLAVKTVVLNPEN
TANGLPQINGLVTMLDSVTGLPVAVLDGNWITEVRTAGLSALAAKYMADPGAKTIGFVGCGAQARSHLDAFADLFDLEHM
VYFGRGQANQDRLAALAHARGLTTAACASGQEVVQSCDLLVTTVTHTGGAAPFLDASGMKAGSFAAVVDLAAPWKRDTFG
ALDCVAIDDLTQEAALPNKLCDPALIHGDLTGLVTGQLQGRKGQSDRTAFVFRGHALGDLALSALAIETYRTL

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=173, Percent_Identity=29.4797687861272, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI62241008, Length=173, Percent_Identity=29.4797687861272, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 32724; Mature: 32592

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADMNIPYLSQDDLIGLGLSTTQIIDSIDDAIRGSVTGTVWSAPKAVITPPDDPRYMMAA
CCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCHHHHHHH
LAAMDNPSLLAVKTVVLNPENTANGLPQINGLVTMLDSVTGLPVAVLDGNWITEVRTAGL
HHHCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
SALAAKYMADPGAKTIGFVGCGAQARSHLDAFADLFDLEHMVYFGRGQANQDRLAALAHA
HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHH
RGLTTAACASGQEVVQSCDLLVTTVTHTGGAAPFLDASGMKAGSFAAVVDLAAPWKRDTF
CCCCHHHHCCCHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCHHEEEECCCCCCCCCC
GALDCVAIDDLTQEAALPNKLCDPALIHGDLTGLVTGQLQGRKGQSDRTAFVFRGHALGD
CCEEEEEHHHHHHHHCCCHHCCCCCEEECCCCEEEEEEECCCCCCCCCEEEEEECCCHHH
LALSALAIETYRTL
HHHHHHHHHHHHCC
>Mature Secondary Structure 
ADMNIPYLSQDDLIGLGLSTTQIIDSIDDAIRGSVTGTVWSAPKAVITPPDDPRYMMAA
CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCHHHHHHH
LAAMDNPSLLAVKTVVLNPENTANGLPQINGLVTMLDSVTGLPVAVLDGNWITEVRTAGL
HHHCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
SALAAKYMADPGAKTIGFVGCGAQARSHLDAFADLFDLEHMVYFGRGQANQDRLAALAHA
HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHH
RGLTTAACASGQEVVQSCDLLVTTVTHTGGAAPFLDASGMKAGSFAAVVDLAAPWKRDTF
CCCCHHHHCCCHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCHHEEEECCCCCCCCCC
GALDCVAIDDLTQEAALPNKLCDPALIHGDLTGLVTGQLQGRKGQSDRTAFVFRGHALGD
CCEEEEEHHHHHHHHCCCHHCCCCCEEECCCCEEEEEEECCCCCCCCCEEEEEECCCHHH
LALSALAIETYRTL
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7873778 [H]