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The map label for this gene is ycaN [H]

Identifier: 89054015

GI number: 89054015

Start: 1493826

End: 1494734

Strand: Reverse

Name: ycaN [H]

Synonym: Jann_1524

Alternate gene names: 89054015

Gene position: 1494734-1493826 (Counterclockwise)

Preceding gene: 89054018

Following gene: 89054013

Centisome position: 34.62

GC content: 59.08

Gene sequence:

>909_bases
ATGAAACGGACCGATCTTGATGGCATTCTACCGCTATTGGCGGTGGTCGAGCATGGGAGCTTCCGGGCGGGCGCTGCGGC
ACTCGGGGTCACACCTTCCGCGATCAGCCAATCTGTGAAGCAATTGGAAGAGCGGATTGGCGTCCCGCTTCTGACACGCA
CGACCCGCAGCGTTGGCTTGACCCAGGCCGGGCAGCTCTTTGTCGACCGTGCCAGTCCAGCGATCTGCGAAGTCCGGGAT
GCCCTTGCTTCGATCTCCGAGTTTGGGCAGCGTCCGTCCGGCCTTTTGCGGATCAGCGCACCGCGCTTGGCCTATCCTGT
CGCGCTAGCACCGGTGCTGCCCGAGTTCATGAAGACCTATCCTGAAATCGAGGTTGAGATTTCGCTGGAGGATACGCTCA
CCGACATCGTGCAAAGCCGGTTCGATGCCGGCATCAGACTAGGCGCAACGGTGGAGGCGGATATGGTTGCGCGCGCGCTC
ACGCCGCCCTCCAGAATGTGTGTGGTCGCGTCACCCGACTACCTTGACGCGCACGGCGTGCCGGAGACACCGGATGATCT
ACTGTCCCATCGCTGTATCAACTTTCGTAGGCCGACGCGGAAAACTGTCTATCACTGGCGTTTTTTGGAAAGGGGCGAGG
ATCGGCATATCCCGGTTCCCGGCGTGATGATTGTCAATGATACGGCCGCGAAGATTGACGCGGCTCTAAATGGCTTTGGA
CTTGCCTACGAACTCGCGCCAGTCGTCGAGCAGCATGTGAAAGCCGGTCGGCTTATCTCGGTACTGGAGGGTTATCTGCC
CGAGGTGCCCGGGTTTCACATATACTACCCGGGACGCAAACAGATCATGTTGAAACTGCGCGTGTTCATTGATTTCGCAG
CTGCTGAGCTCCGAAGCAGCAGAGTGTAA

Upstream 100 bases:

>100_bases
TCATGGCTCTGTCTCCGTTGTTGATGAGACGAATATGGAGCCTTGGCGGCTGTTCGATAATCCGGCACTTTCTGATCAAG
CTATTAAGCGAGGCTAATGA

Downstream 100 bases:

>100_bases
AGGGAACACAATAACAGGTTATTCCAAATGGAAAGAGTGCACACGATCAAGACCTATTAGGTCGAGACTTTTGAGAATTG
TTGGCCAGTTTCAAGGTCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MKRTDLDGILPLLAVVEHGSFRAGAAALGVTPSAISQSVKQLEERIGVPLLTRTTRSVGLTQAGQLFVDRASPAICEVRD
ALASISEFGQRPSGLLRISAPRLAYPVALAPVLPEFMKTYPEIEVEISLEDTLTDIVQSRFDAGIRLGATVEADMVARAL
TPPSRMCVVASPDYLDAHGVPETPDDLLSHRCINFRRPTRKTVYHWRFLERGEDRHIPVPGVMIVNDTAAKIDAALNGFG
LAYELAPVVEQHVKAGRLISVLEGYLPEVPGFHIYYPGRKQIMLKLRVFIDFAAAELRSSRV

Sequences:

>Translated_302_residues
MKRTDLDGILPLLAVVEHGSFRAGAAALGVTPSAISQSVKQLEERIGVPLLTRTTRSVGLTQAGQLFVDRASPAICEVRD
ALASISEFGQRPSGLLRISAPRLAYPVALAPVLPEFMKTYPEIEVEISLEDTLTDIVQSRFDAGIRLGATVEADMVARAL
TPPSRMCVVASPDYLDAHGVPETPDDLLSHRCINFRRPTRKTVYHWRFLERGEDRHIPVPGVMIVNDTAAKIDAALNGFG
LAYELAPVVEQHVKAGRLISVLEGYLPEVPGFHIYYPGRKQIMLKLRVFIDFAAAELRSSRV
>Mature_302_residues
MKRTDLDGILPLLAVVEHGSFRAGAAALGVTPSAISQSVKQLEERIGVPLLTRTTRSVGLTQAGQLFVDRASPAICEVRD
ALASISEFGQRPSGLLRISAPRLAYPVALAPVLPEFMKTYPEIEVEISLEDTLTDIVQSRFDAGIRLGATVEADMVARAL
TPPSRMCVVASPDYLDAHGVPETPDDLLSHRCINFRRPTRKTVYHWRFLERGEDRHIPVPGVMIVNDTAAKIDAALNGFG
LAYELAPVVEQHVKAGRLISVLEGYLPEVPGFHIYYPGRKQIMLKLRVFIDFAAAELRSSRV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=41.7241379310345, Blast_Score=243, Evalue=9e-66,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=38.8316151202749, Blast_Score=225, Evalue=2e-60,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=32.312925170068, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI145693193, Length=287, Percent_Identity=30.3135888501742, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=28.6206896551724, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789639, Length=278, Percent_Identity=31.294964028777, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI87081978, Length=287, Percent_Identity=27.8745644599303, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI157672245, Length=170, Percent_Identity=33.5294117647059, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786448, Length=292, Percent_Identity=24.3150684931507, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790399, Length=133, Percent_Identity=33.8345864661654, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789173, Length=277, Percent_Identity=27.4368231046931, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788706, Length=289, Percent_Identity=23.1833910034602, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787879, Length=141, Percent_Identity=31.9148936170213, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI2367136, Length=123, Percent_Identity=30.0813008130081, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786508, Length=146, Percent_Identity=28.7671232876712, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787949, Length=164, Percent_Identity=28.6585365853659, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788748, Length=113, Percent_Identity=34.5132743362832, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33117; Mature: 33117

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTDLDGILPLLAVVEHGSFRAGAAALGVTPSAISQSVKQLEERIGVPLLTRTTRSVGL
CCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCEEECCHHHCCC
TQAGQLFVDRASPAICEVRDALASISEFGQRPSGLLRISAPRLAYPVALAPVLPEFMKTY
CCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHC
PEIEVEISLEDTLTDIVQSRFDAGIRLGATVEADMVARALTPPSRMCVVASPDYLDAHGV
CCEEEEEEHHHHHHHHHHHHHCCCEEECCEEHHHHHHHHCCCCCCEEEEECCCCCCCCCC
PETPDDLLSHRCINFRRPTRKTVYHWRFLERGEDRHIPVPGVMIVNDTAAKIDAALNGFG
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHCCCC
LAYELAPVVEQHVKAGRLISVLEGYLPEVPGFHIYYPGRKQIMLKLRVFIDFAAAELRSS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHC
RV
CC
>Mature Secondary Structure
MKRTDLDGILPLLAVVEHGSFRAGAAALGVTPSAISQSVKQLEERIGVPLLTRTTRSVGL
CCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCEEECCHHHCCC
TQAGQLFVDRASPAICEVRDALASISEFGQRPSGLLRISAPRLAYPVALAPVLPEFMKTY
CCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHC
PEIEVEISLEDTLTDIVQSRFDAGIRLGATVEADMVARALTPPSRMCVVASPDYLDAHGV
CCEEEEEEHHHHHHHHHHHHHCCCEEECCEEHHHHHHHHCCCCCCEEEEECCCCCCCCCC
PETPDDLLSHRCINFRRPTRKTVYHWRFLERGEDRHIPVPGVMIVNDTAAKIDAALNGFG
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHCCCC
LAYELAPVVEQHVKAGRLISVLEGYLPEVPGFHIYYPGRKQIMLKLRVFIDFAAAELRSS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHC
RV
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]