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The map label for this gene is ybaO [C]

Identifier: 89054013

GI number: 89054013

Start: 1492006

End: 1492458

Strand: Reverse

Name: ybaO [C]

Synonym: Jann_1522

Alternate gene names: 89054013

Gene position: 1492458-1492006 (Counterclockwise)

Preceding gene: 89054015

Following gene: 89054012

Centisome position: 34.56

GC content: 49.89

Gene sequence:

>453_bases
ATGGATTCCACAGATCGAAAGATTCTCGATCTTCTTCAGAAGAATGCCAAAACATCCATCCAGCAGCTTTCTGAAACTAC
AGGCATTTCTACGGCCTCCGTCCAAAGGCGAATGAGAGCATTCAGAGAAGCGGGGATCATCAAGCGCGAGGTTGCAATCC
TGGATCCAACGCAGATCGGTTTGGGGATTACAGCAATTGTCTCGGTGGAATTGGAACGCGACCGCCTTGATCAGATTGAT
GCCTTCAAACGCAAGGCCCGAAACGACCGTCAGGTAACGCATTTCTACTGCATAGCAGGCGAGGCCGACTTCATCCTGGT
TGTGATGGCAGAGAATATCGCTGGGTATGAGGCGTTCACCCACCGCTTTTTCTTCGCAGATAAGAATGTTCGGAAGTTTC
GGACTTCCATCGTGGTTTCAACGGAAAAAGCGACATCGGAGCTACCAATCTGA

Upstream 100 bases:

>100_bases
GACAGGTTTAGTGAAAGCCGGTGATACGATATATGTTCAGTTGTGGATTTTTGTGATGTAGTCACATCAAGAAAGCGGTA
AATTCAAAGAAGGAGAGATC

Downstream 100 bases:

>100_bases
AAGCCGACACTGCGTGCATCCAAGTGAACGGCAGCAAAGTCCGCATCTTACCTGTTCGTGCGCAGCTCCGCGAACGGCGG
CAGGTCTTAGCCGTACCGTT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MDSTDRKILDLLQKNAKTSIQQLSETTGISTASVQRRMRAFREAGIIKREVAILDPTQIGLGITAIVSVELERDRLDQID
AFKRKARNDRQVTHFYCIAGEADFILVVMAENIAGYEAFTHRFFFADKNVRKFRTSIVVSTEKATSELPI

Sequences:

>Translated_150_residues
MDSTDRKILDLLQKNAKTSIQQLSETTGISTASVQRRMRAFREAGIIKREVAILDPTQIGLGITAIVSVELERDRLDQID
AFKRKARNDRQVTHFYCIAGEADFILVVMAENIAGYEAFTHRFFFADKNVRKFRTSIVVSTEKATSELPI
>Mature_150_residues
MDSTDRKILDLLQKNAKTSIQQLSETTGISTASVQRRMRAFREAGIIKREVAILDPTQIGLGITAIVSVELERDRLDQID
AFKRKARNDRQVTHFYCIAGEADFILVVMAENIAGYEAFTHRFFFADKNVRKFRTSIVVSTEKATSELPI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=30, Blast_Score=85, Evalue=2e-18,
Organism=Escherichia coli, GI1787116, Length=150, Percent_Identity=24, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 16996; Mature: 16996

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSTDRKILDLLQKNAKTSIQQLSETTGISTASVQRRMRAFREAGIIKREVAILDPTQIG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHEEEECCCHHC
LGITAIVSVELERDRLDQIDAFKRKARNDRQVTHFYCIAGEADFILVVMAENIAGYEAFT
CCEEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEECCCCHHHHHH
HRFFFADKNVRKFRTSIVVSTEKATSELPI
HHHEECCCHHHHHHHHHEEECCCCCCCCCC
>Mature Secondary Structure
MDSTDRKILDLLQKNAKTSIQQLSETTGISTASVQRRMRAFREAGIIKREVAILDPTQIG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHEEEECCCHHC
LGITAIVSVELERDRLDQIDAFKRKARNDRQVTHFYCIAGEADFILVVMAENIAGYEAFT
CCEEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEECCCCHHHHHH
HRFFFADKNVRKFRTSIVVSTEKATSELPI
HHHEECCCHHHHHHHHHEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]