| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053982
Identifier: 89053982
GI number: 89053982
Start: 1461044
End: 1462261
Strand: Direct
Name: 89053982
Synonym: Jann_1491
Alternate gene names: NA
Gene position: 1461044-1462261 (Clockwise)
Preceding gene: 89053981
Following gene: 89053988
Centisome position: 33.84
GC content: 61.0
Gene sequence:
>1218_bases GTGAGTCACAGCGCGCGCGCCAAGTTGGCACTAGCGCATCTTGGCGAAGTCGATCCTGCGCTGGCCGTTCTCGCGCTTTG GTGTCGACATCGTGATGGCGATGGAGCAACACGAACACAAGGAAATACAATCCTTTACGGGCCGTCCTTTACGTCGTTTG GATTGGCCGAGCAGGTCGGTTTGCTCGCCCATCACGTCTTGCACGTGGCCCTCCAGCATTCAGATCGTCAAGCTGCCTTG GCGGAACGGCTTGGCGACCAATTCGATCAGACCCTTTTCGGGTTAGCGGCCGATGGATTGATAAACGAAACGCTGCTGCT GGCTGGCCACGCGTTGCCACGACCTGCCGTTGTCGTGACAGATCTGTTGGAAGCGGTCGGAAACCCGGCACCATCAAGCA CGCAAGCCTTGTCCGAATGGGATGTGGATCGCCTGGCGATGGCGTTGCATTCCGATTCGCGAAGTACCGAAAAGGCTAGA AAATTTGGCAGATCACGCGATTTCTCAGCCGATGTCGAAGATGGAAAGTCAGGCGAAGAAGAGGACACACCAAGTGCCGC AGAGTGGCGCAATCAGATGCTTCGAGCATTGGAAGCGGGTCGCAAAGCGGGCACAGGAATTGGCCGTTTCGGAGCGCTTC TGGCCGACATTGCGCCACCAGCCATCCCATGGGAGGTCCAGCTAAGGGGGCTATTGACCCTTGCGTTGAGTGACGTGCCC AAGATTTCTTACCGGCGACCGGCATCGCGCTGGATCGCGGCTGTGGCTGAGGCGCGGATCGCGGGCACCTTGGAGCCGGC GTTTCAACCGGGCCGTGCGCGCAGCGGATCGCGCCCGCGTGTGGTGGTTGGATTGGACACCTCCAGCTCCATCAACGCAA TGGCACTATCGCTTTTTTGTGCGGAGGCAGAAGGGGTTAGCCGTCGGTCGGGGGCCGAGGTGCATCTGCTGGCCTTCGAC GAAAACGTTCACACCGCGCTTAGGATGGACACCGCTGCATGGCGATCACTTAGGGATAGGCCCCTTCGCACCGGCGGCGG CACGGACTACGCGCCGGTGATGGAGGCCGCCGCGCGTTTGCGCCCTTCAATCCTGGTGATGTTGACTGATCTCGACGCGC CGATCGGGCCGCCGCCGCCGTTTCCTGTCCTTTGGGTCGTGCCGGGACGTGCCGGTGTCGACGCGCCTTTCGGTCGGGTG CTTCGGATCGACGGCTAA
Upstream 100 bases:
>100_bases TTCTGATTGCCCGGGCGATGGATCGGGGCTGGCAGGAGGTGTTCGCCGCGTCCGACGCCTACGCGGACTATGCGCGGGAG CGGGCGGCCGCAGGATTGCC
Downstream 100 bases:
>100_bases GCCTATTCAGCCGCAGCCTTTACGGCATGGCTTTCCCGTTGTGTCGACTGCCAATCCGGTGCGATCCAAGGCGTCAGATT CTCGGCGGGCACACGGCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MSHSARAKLALAHLGEVDPALAVLALWCRHRDGDGATRTQGNTILYGPSFTSFGLAEQVGLLAHHVLHVALQHSDRQAAL AERLGDQFDQTLFGLAADGLINETLLLAGHALPRPAVVVTDLLEAVGNPAPSSTQALSEWDVDRLAMALHSDSRSTEKAR KFGRSRDFSADVEDGKSGEEEDTPSAAEWRNQMLRALEAGRKAGTGIGRFGALLADIAPPAIPWEVQLRGLLTLALSDVP KISYRRPASRWIAAVAEARIAGTLEPAFQPGRARSGSRPRVVVGLDTSSSINAMALSLFCAEAEGVSRRSGAEVHLLAFD ENVHTALRMDTAAWRSLRDRPLRTGGGTDYAPVMEAAARLRPSILVMLTDLDAPIGPPPPFPVLWVVPGRAGVDAPFGRV LRIDG
Sequences:
>Translated_405_residues MSHSARAKLALAHLGEVDPALAVLALWCRHRDGDGATRTQGNTILYGPSFTSFGLAEQVGLLAHHVLHVALQHSDRQAAL AERLGDQFDQTLFGLAADGLINETLLLAGHALPRPAVVVTDLLEAVGNPAPSSTQALSEWDVDRLAMALHSDSRSTEKAR KFGRSRDFSADVEDGKSGEEEDTPSAAEWRNQMLRALEAGRKAGTGIGRFGALLADIAPPAIPWEVQLRGLLTLALSDVP KISYRRPASRWIAAVAEARIAGTLEPAFQPGRARSGSRPRVVVGLDTSSSINAMALSLFCAEAEGVSRRSGAEVHLLAFD ENVHTALRMDTAAWRSLRDRPLRTGGGTDYAPVMEAAARLRPSILVMLTDLDAPIGPPPPFPVLWVVPGRAGVDAPFGRV LRIDG >Mature_404_residues SHSARAKLALAHLGEVDPALAVLALWCRHRDGDGATRTQGNTILYGPSFTSFGLAEQVGLLAHHVLHVALQHSDRQAALA ERLGDQFDQTLFGLAADGLINETLLLAGHALPRPAVVVTDLLEAVGNPAPSSTQALSEWDVDRLAMALHSDSRSTEKARK FGRSRDFSADVEDGKSGEEEDTPSAAEWRNQMLRALEAGRKAGTGIGRFGALLADIAPPAIPWEVQLRGLLTLALSDVPK ISYRRPASRWIAAVAEARIAGTLEPAFQPGRARSGSRPRVVVGLDTSSSINAMALSLFCAEAEGVSRRSGAEVHLLAFDE NVHTALRMDTAAWRSLRDRPLRTGGGTDYAPVMEAAARLRPSILVMLTDLDAPIGPPPPFPVLWVVPGRAGVDAPFGRVL RIDG
Specific function: Unknown
COG id: COG3864
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018698 [H]
Pfam domain/function: PF09967 DUF2201 [H]
EC number: NA
Molecular weight: Translated: 43267; Mature: 43135
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHSARAKLALAHLGEVDPALAVLALWCRHRDGDGATRTQGNTILYGPSFTSFGLAEQVG CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCHHHHHH LLAHHVLHVALQHSDRQAALAERLGDQFDQTLFGLAADGLINETLLLAGHALPRPAVVVT HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH DLLEAVGNPAPSSTQALSEWDVDRLAMALHSDSRSTEKARKFGRSRDFSADVEDGKSGEE HHHHHHCCCCCCCHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC EDTPSAAEWRNQMLRALEAGRKAGTGIGRFGALLADIAPPAIPWEVQLRGLLTLALSDVP CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC KISYRRPASRWIAAVAEARIAGTLEPAFQPGRARSGSRPRVVVGLDTSSSINAMALSLFC CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH AEAEGVSRRSGAEVHLLAFDENVHTALRMDTAAWRSLRDRPLRTGGGTDYAPVMEAAARL HHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC RPSILVMLTDLDAPIGPPPPFPVLWVVPGRAGVDAPFGRVLRIDG CCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECC >Mature Secondary Structure SHSARAKLALAHLGEVDPALAVLALWCRHRDGDGATRTQGNTILYGPSFTSFGLAEQVG CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCHHHHHH LLAHHVLHVALQHSDRQAALAERLGDQFDQTLFGLAADGLINETLLLAGHALPRPAVVVT HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH DLLEAVGNPAPSSTQALSEWDVDRLAMALHSDSRSTEKARKFGRSRDFSADVEDGKSGEE HHHHHHCCCCCCCHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC EDTPSAAEWRNQMLRALEAGRKAGTGIGRFGALLADIAPPAIPWEVQLRGLLTLALSDVP CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC KISYRRPASRWIAAVAEARIAGTLEPAFQPGRARSGSRPRVVVGLDTSSSINAMALSLFC CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH AEAEGVSRRSGAEVHLLAFDENVHTALRMDTAAWRSLRDRPLRTGGGTDYAPVMEAAARL HHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC RPSILVMLTDLDAPIGPPPPFPVLWVVPGRAGVDAPFGRVLRIDG CCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8168477; 10360571 [H]