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The map label for this gene is rbsC [H]

Identifier: 89053957

GI number: 89053957

Start: 1435683

End: 1436711

Strand: Direct

Name: rbsC [H]

Synonym: Jann_1466

Alternate gene names: 89053957

Gene position: 1435683-1436711 (Clockwise)

Preceding gene: 89053956

Following gene: 89053958

Centisome position: 33.25

GC content: 62.97

Gene sequence:

>1029_bases
ATGAGCGATCAACCTCGCATTCACGCCGACGCGGCGATGGAGACCGGACTGAAACGGTTCGGGCGGTATCTGGCCGACAA
TCCGGTGATCCCGCTGATCGCCTTCCTCTTCCTGTTGATCGCTGTGCTGGAGATCATGCGCCCCGGCATCGTGACACCGT
TTCGCGCCGGGCGGGATGGGATCATTTCGACCTTCTGGGTCGGCAATTTGATCAAATTCGCGATCCCACTGGCGATGCTC
GCGGCCTGCCAAGTGTTAACCATGTTAACTGCCGGCATCGACATGAGCGCTGGCATTCTTGCGACCGTTGCGGCCTTCGT
TTGTGCCACGCTGTCGCCGCTGATTGGCGTCACGCCCGCCGTCCTTGTCGCGCTTGGCGCCGGGGTTGTCGCGGGCCTGG
TGAACGGGTTCGGCGTGGGGGTCGTGCGGGTGCATCCGCTGATCATGACGCTGGGGACGGGCTTGATCGCGACGGGTTGT
CTTCAGGTCTATCAACGCTTCGTCATCTCGACCGGGACCCTGATCCCCGAGGCGCTGGAATGGCTTGGCACCGGGCGCAC
GGCGGGGCTACCCAACGGGCTTTTCGTCTTCATCCCCTTTGCCGCGATTATCCTTTATATTATGCGGTTTACGGGCTTCG
GGCGGCTCCTTTTTGCGCTGGGTTCCAATGAGGCGGCGACCAAGCTCAGCGGGGTGCGGTCGTGGCAGGTCTACCTCGCG
CTCTACGCGCTCTCGGGCCTGATCGCGGCGCTTGCGGGGCTGCTCTATCTTGGCATGATCCGCACACCGTCTCTTTCCTT
GGCCAACCCGCTTCTTCTGCCGTCGGTGGCCGCCGCCGTAATCGGTGGCACCTCCATCTTCGGCGGGCGGGGCAGCTTTG
CTGGCGCCATCGTAGGGGCCTTGATCCTGCGCGTGATCGACACGATGCTGACGCTGCTGCAAATGCCCGAGGGCGCACGG
ATCGCGCTGTTCGGTCTGATCATCCTTCTCGTCACCGCGCTATATGTGCGCATCACAGGGGCCCGTTAA

Upstream 100 bases:

>100_bases
TCGCCGCCGTTGATCCCAATGTGACAACGATTGTCGAAGGTGTCATTATGGTGGCTGTGCTCATGCTCGGCGCGGTTTTG
ACTTACAGGGGGACGCGCTG

Downstream 100 bases:

>100_bases
CCATGACGTACAAGGTCGTCGGCATCAGTTTCGATCATATGCACATGGGCGATCTGCTGCGCATGGTGGACGCTCATCCG
AATGCGGAGATCACGGCACT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSDQPRIHADAAMETGLKRFGRYLADNPVIPLIAFLFLLIAVLEIMRPGIVTPFRAGRDGIISTFWVGNLIKFAIPLAML
AACQVLTMLTAGIDMSAGILATVAAFVCATLSPLIGVTPAVLVALGAGVVAGLVNGFGVGVVRVHPLIMTLGTGLIATGC
LQVYQRFVISTGTLIPEALEWLGTGRTAGLPNGLFVFIPFAAIILYIMRFTGFGRLLFALGSNEAATKLSGVRSWQVYLA
LYALSGLIAALAGLLYLGMIRTPSLSLANPLLLPSVAAAVIGGTSIFGGRGSFAGAIVGALILRVIDTMLTLLQMPEGAR
IALFGLIILLVTALYVRITGAR

Sequences:

>Translated_342_residues
MSDQPRIHADAAMETGLKRFGRYLADNPVIPLIAFLFLLIAVLEIMRPGIVTPFRAGRDGIISTFWVGNLIKFAIPLAML
AACQVLTMLTAGIDMSAGILATVAAFVCATLSPLIGVTPAVLVALGAGVVAGLVNGFGVGVVRVHPLIMTLGTGLIATGC
LQVYQRFVISTGTLIPEALEWLGTGRTAGLPNGLFVFIPFAAIILYIMRFTGFGRLLFALGSNEAATKLSGVRSWQVYLA
LYALSGLIAALAGLLYLGMIRTPSLSLANPLLLPSVAAAVIGGTSIFGGRGSFAGAIVGALILRVIDTMLTLLQMPEGAR
IALFGLIILLVTALYVRITGAR
>Mature_341_residues
SDQPRIHADAAMETGLKRFGRYLADNPVIPLIAFLFLLIAVLEIMRPGIVTPFRAGRDGIISTFWVGNLIKFAIPLAMLA
ACQVLTMLTAGIDMSAGILATVAAFVCATLSPLIGVTPAVLVALGAGVVAGLVNGFGVGVVRVHPLIMTLGTGLIATGCL
QVYQRFVISTGTLIPEALEWLGTGRTAGLPNGLFVFIPFAAIILYIMRFTGFGRLLFALGSNEAATKLSGVRSWQVYLAL
YALSGLIAALAGLLYLGMIRTPSLSLANPLLLPSVAAAVIGGTSIFGGRGSFAGAIVGALILRVIDTMLTLLQMPEGARI
ALFGLIILLVTALYVRITGAR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=299, Percent_Identity=32.7759197324415, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788896, Length=154, Percent_Identity=36.3636363636364, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789992, Length=126, Percent_Identity=38.0952380952381, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI145693214, Length=254, Percent_Identity=32.2834645669291, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI145693152, Length=266, Percent_Identity=29.6992481203008, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790524, Length=261, Percent_Identity=29.1187739463602, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788471, Length=212, Percent_Identity=32.0754716981132, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787793, Length=256, Percent_Identity=30.46875, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787794, Length=193, Percent_Identity=26.9430051813472, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35710; Mature: 35578

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQPRIHADAAMETGLKRFGRYLADNPVIPLIAFLFLLIAVLEIMRPGIVTPFRAGRDG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
IISTFWVGNLIKFAIPLAMLAACQVLTMLTAGIDMSAGILATVAAFVCATLSPLIGVTPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VLVALGAGVVAGLVNGFGVGVVRVHPLIMTLGTGLIATGCLQVYQRFVISTGTLIPEALE
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
WLGTGRTAGLPNGLFVFIPFAAIILYIMRFTGFGRLLFALGSNEAATKLSGVRSWQVYLA
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LYALSGLIAALAGLLYLGMIRTPSLSLANPLLLPSVAAAVIGGTSIFGGRGSFAGAIVGA
HHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LILRVIDTMLTLLQMPEGARIALFGLIILLVTALYVRITGAR
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SDQPRIHADAAMETGLKRFGRYLADNPVIPLIAFLFLLIAVLEIMRPGIVTPFRAGRDG
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC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HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]