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The map label for this gene is rbsC [H]

Identifier: 89053956

GI number: 89053956

Start: 1434748

End: 1435683

Strand: Direct

Name: rbsC [H]

Synonym: Jann_1465

Alternate gene names: 89053956

Gene position: 1434748-1435683 (Clockwise)

Preceding gene: 89053955

Following gene: 89053957

Centisome position: 33.23

GC content: 60.15

Gene sequence:

>936_bases
ATGAGCCGTGTCCTTCGCAAGAACGCGTGGACCTTCGGGCTAGTCGGTCTGCTATGTGCTTTGCTTGTGATCACAAAATT
GATTCAACCGGGTTTTGGCGTCAGCGGTTTGGAAAGCCTTGCGCGCGCAGCGCTCCCCTTCGCATTTGCGACAGCGGCTA
TGGCGATCGTTGTCATCGTTGGCGGAATTGACCTGTCCATCGCGTCGATGATGGCGGTTTGCGGCGTGACGGCGGCGGTT
TTGATGCAGAGCATGGGCGTGATACCTGCGGTTGTGATCACACTGCTTGTGGGGCTGGCGATGGGGGCGTTGAATGGCGC
GTTAATCGTGTTAACCAAAGTGCCTGACATCGTCGTGACGCTCGCCATGCTGTTTGTGTGGGAGGGCGTCGCATTGTTGA
TCCTGACATCCCCGGGGGGCACCGTCGCCCCGGTACTGCGCGCTCTGATCTCTGGCACGGTCATCCCCGGCATCCCGAAT
GCGTTGATTTTCATGGGTTTAACGATTGCGTTAGTGTGGTTTCCGATCCGCCGCGCGAAACTGGGCCTGTCGATCTACGC
GGTGGGCTCGGATGAGCTGGCGGCCTTCCGGTCCGGTATTAACGTCGGAGGGACCAAGGTCATCGCCTATGGTTTGGCGG
GTGTCCTGTCCGCGCTCGGCGGGCTTTCGTTAATCATGTTGACGGGGATCGGAGAGCCTGTGCCCGGGCCGTATCTTCTG
GCCTCTGTGGCCGCCGTGGTCCTGGGCGGCGTGGTCCTGGGCGGCGGGAAGGGCGGCCTTCTGGGACCGATCATTGCGGT
CTTCATCCTACGCATCATCCGCACGATCCTGACCTTCGCCGCCGTTGATCCCAATGTGACAACGATTGTCGAAGGTGTCA
TTATGGTGGCTGTGCTCATGCTCGGCGCGGTTTTGACTTACAGGGGGACGCGCTGA

Upstream 100 bases:

>100_bases
TTTTCAACGGGCGGGTCGTGAATGTGGTCAATGCCGCCGACGCCACGGAAGAGGTCTTGATGCGCGCGGCCTACGGGCTC
ACGGATGTGAGCGCGGCGTC

Downstream 100 bases:

>100_bases
TGAGCGATCAACCTCGCATTCACGCCGACGCGGCGATGGAGACCGGACTGAAACGGTTCGGGCGGTATCTGGCCGACAAT
CCGGTGATCCCGCTGATCGC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSRVLRKNAWTFGLVGLLCALLVITKLIQPGFGVSGLESLARAALPFAFATAAMAIVVIVGGIDLSIASMMAVCGVTAAV
LMQSMGVIPAVVITLLVGLAMGALNGALIVLTKVPDIVVTLAMLFVWEGVALLILTSPGGTVAPVLRALISGTVIPGIPN
ALIFMGLTIALVWFPIRRAKLGLSIYAVGSDELAAFRSGINVGGTKVIAYGLAGVLSALGGLSLIMLTGIGEPVPGPYLL
ASVAAVVLGGVVLGGGKGGLLGPIIAVFILRIIRTILTFAAVDPNVTTIVEGVIMVAVLMLGAVLTYRGTR

Sequences:

>Translated_311_residues
MSRVLRKNAWTFGLVGLLCALLVITKLIQPGFGVSGLESLARAALPFAFATAAMAIVVIVGGIDLSIASMMAVCGVTAAV
LMQSMGVIPAVVITLLVGLAMGALNGALIVLTKVPDIVVTLAMLFVWEGVALLILTSPGGTVAPVLRALISGTVIPGIPN
ALIFMGLTIALVWFPIRRAKLGLSIYAVGSDELAAFRSGINVGGTKVIAYGLAGVLSALGGLSLIMLTGIGEPVPGPYLL
ASVAAVVLGGVVLGGGKGGLLGPIIAVFILRIIRTILTFAAVDPNVTTIVEGVIMVAVLMLGAVLTYRGTR
>Mature_310_residues
SRVLRKNAWTFGLVGLLCALLVITKLIQPGFGVSGLESLARAALPFAFATAAMAIVVIVGGIDLSIASMMAVCGVTAAVL
MQSMGVIPAVVITLLVGLAMGALNGALIVLTKVPDIVVTLAMLFVWEGVALLILTSPGGTVAPVLRALISGTVIPGIPNA
LIFMGLTIALVWFPIRRAKLGLSIYAVGSDELAAFRSGINVGGTKVIAYGLAGVLSALGGLSLIMLTGIGEPVPGPYLLA
SVAAVVLGGVVLGGGKGGLLGPIIAVFILRIIRTILTFAAVDPNVTTIVEGVIMVAVLMLGAVLTYRGTR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=293, Percent_Identity=32.0819112627986, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788896, Length=315, Percent_Identity=29.2063492063492, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI87082395, Length=234, Percent_Identity=33.7606837606838, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787794, Length=318, Percent_Identity=27.0440251572327, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790524, Length=255, Percent_Identity=29.8039215686275, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI145693214, Length=263, Percent_Identity=31.5589353612167, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693152, Length=255, Percent_Identity=29.8039215686275, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 31503; Mature: 31372

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVLRKNAWTFGLVGLLCALLVITKLIQPGFGVSGLESLARAALPFAFATAAMAIVVIV
CCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGIDLSIASMMAVCGVTAAVLMQSMGVIPAVVITLLVGLAMGALNGALIVLTKVPDIVVT
CCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
LAMLFVWEGVALLILTSPGGTVAPVLRALISGTVIPGIPNALIFMGLTIALVWFPIRRAK
HHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LGLSIYAVGSDELAAFRSGINVGGTKVIAYGLAGVLSALGGLSLIMLTGIGEPVPGPYLL
HCEEEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
ASVAAVVLGGVVLGGGKGGLLGPIIAVFILRIIRTILTFAAVDPNVTTIVEGVIMVAVLM
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LGAVLTYRGTR
HHHHHHCCCCC
>Mature Secondary Structure 
SRVLRKNAWTFGLVGLLCALLVITKLIQPGFGVSGLESLARAALPFAFATAAMAIVVIV
CCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGIDLSIASMMAVCGVTAAVLMQSMGVIPAVVITLLVGLAMGALNGALIVLTKVPDIVVT
CCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
LAMLFVWEGVALLILTSPGGTVAPVLRALISGTVIPGIPNALIFMGLTIALVWFPIRRAK
HHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LGLSIYAVGSDELAAFRSGINVGGTKVIAYGLAGVLSALGGLSLIMLTGIGEPVPGPYLL
HCEEEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
ASVAAVVLGGVVLGGGKGGLLGPIIAVFILRIIRTILTFAAVDPNVTTIVEGVIMVAVLM
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LGAVLTYRGTR
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]