Click here to switch to the map view.

The map label for this gene is siaP [H]

Identifier: 89053939

GI number: 89053939

Start: 1417601

End: 1418584

Strand: Direct

Name: siaP [H]

Synonym: Jann_1448

Alternate gene names: 89053939

Gene position: 1417601-1418584 (Clockwise)

Preceding gene: 89053938

Following gene: 89053940

Centisome position: 32.83

GC content: 63.72

Gene sequence:

>984_bases
ATGAAGACAATCAATGCATTAATGGCATCTGCCGCCGTGGCAATGACCGGTGTCGCGGGCACGCAGGCCGTGGCGGACGA
CTTTCGTCTGGGCCTGATCACGCCGCCCCCCCATGTCTGGACGTTGGCGGCGGGCGAGTTTGGCGAGGCGCTGGCCGAGG
CCTCGGACGGGGCGCATTCCGTGAGCATTTTCCCGGCCCGCCAGTTGGGCAACGAGGCGGAGATGTTGCAGCAATTGCAG
ACCGGCGCGCTGGACATGGCGTTCATGACGGTGGCCGAAGTGTCCAATCGCGCGCCCGAGTTCGGCGCCTTCTACGCGCC
CTATCTGGCCAACGACATGGCCCATGCAGCGGCGATCCTGCGGTCCGATGAGGCGCGGGCTTTGCTGGATCAACTGCCCG
CCACGGTGGGCGTTGTCGGCGTGGGCTATGGTTCTGCGGGTATGCGGCAGATCCTGACCAATGGGGGTGCAGACAGCGCG
GCAGACCTTGCCGGTCAGAAGATCCGCATCACGCCATTTGAACCCATTCTGGACTTCTACAATGCGTTCGGCGTCGCCCC
CACGCCCATGCCTTTGCCCGCCGTCTTCGACGCGCTGGCCAACGGGCAGGTCGACGGGATCGACATGGACGCCGAGCTGA
TCGTGCTGCTGAACTACCACGAGCATGCCGATACGATGATCCAGACCAACCACATGATGTTCCCGATGGTGGGCCTTGTG
TCGGGGCGCGTCTGGGCGGGCTTGACCGCGGAAGATCAGGCGATGATTTCCGAGTTGATGGCGGCGGCTGTGGACAGCAC
GCTGGACGTCTATGTGGAGCGGGACGGCCCGTGGCTGGAAGAGATCGAGGCCACCGGCATCAGCTATCAGGTTGCCGGGC
CAGAGTTCTTTGGCGATGCCATTGAGACATGGGAAGCCGCCTGGACGGAACGTGCCGGAGATGCGCTGGCAGCCTTGCGC
TCTGCTGCGGCAGAATTAGAATAA

Upstream 100 bases:

>100_bases
GCCGACGTTGCACGGGGTCCGGAAATGGGCCACGTTGGTCGTTAACGAGTTCAATGATGTCCGGGCCGGAAAGAAGCCTC
GGGCCGATAGGGAGAGAAAC

Downstream 100 bases:

>100_bases
CGCAGTATTTCAATGACTTGGCGGGATGCTCAAACTTGAGCATCCCGCTACACCCCGACAGGACCCGCGCATAATGCTCC
ACCGCCTCTCCGCCGCTTGG

Product: TRAP dicarboxylate transporter subunit DctP

Products: NA

Alternate protein names: Extracytoplasmic solute receptor protein siaP; N-acetylneuraminic-binding protein; Neu5Ac-binding protein [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MKTINALMASAAVAMTGVAGTQAVADDFRLGLITPPPHVWTLAAGEFGEALAEASDGAHSVSIFPARQLGNEAEMLQQLQ
TGALDMAFMTVAEVSNRAPEFGAFYAPYLANDMAHAAAILRSDEARALLDQLPATVGVVGVGYGSAGMRQILTNGGADSA
ADLAGQKIRITPFEPILDFYNAFGVAPTPMPLPAVFDALANGQVDGIDMDAELIVLLNYHEHADTMIQTNHMMFPMVGLV
SGRVWAGLTAEDQAMISELMAAAVDSTLDVYVERDGPWLEEIEATGISYQVAGPEFFGDAIETWEAAWTERAGDALAALR
SAAAELE

Sequences:

>Translated_327_residues
MKTINALMASAAVAMTGVAGTQAVADDFRLGLITPPPHVWTLAAGEFGEALAEASDGAHSVSIFPARQLGNEAEMLQQLQ
TGALDMAFMTVAEVSNRAPEFGAFYAPYLANDMAHAAAILRSDEARALLDQLPATVGVVGVGYGSAGMRQILTNGGADSA
ADLAGQKIRITPFEPILDFYNAFGVAPTPMPLPAVFDALANGQVDGIDMDAELIVLLNYHEHADTMIQTNHMMFPMVGLV
SGRVWAGLTAEDQAMISELMAAAVDSTLDVYVERDGPWLEEIEATGISYQVAGPEFFGDAIETWEAAWTERAGDALAALR
SAAAELE
>Mature_327_residues
MKTINALMASAAVAMTGVAGTQAVADDFRLGLITPPPHVWTLAAGEFGEALAEASDGAHSVSIFPARQLGNEAEMLQQLQ
TGALDMAFMTVAEVSNRAPEFGAFYAPYLANDMAHAAAILRSDEARALLDQLPATVGVVGVGYGSAGMRQILTNGGADSA
ADLAGQKIRITPFEPILDFYNAFGVAPTPMPLPAVFDALANGQVDGIDMDAELIVLLNYHEHADTMIQTNHMMFPMVGLV
SGRVWAGLTAEDQAMISELMAAAVDSTLDVYVERDGPWLEEIEATGISYQVAGPEFFGDAIETWEAAWTERAGDALAALR
SAAAELE

Specific function: Part of the tripartite ATP-independent periplasmic (TRAP) transport system siaPT involved in the uptake of sialic acid. This protein specifically binds sialic acid [H]

COG id: COG1638

COG function: function code G; TRAP-type C4-dicarboxylate transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 7 family [H]

Homologues:

Organism=Escherichia coli, GI1790004, Length=239, Percent_Identity=26.3598326359833, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018389
- InterPro:   IPR004682 [H]

Pfam domain/function: PF03480 SBP_bac_7 [H]

EC number: NA

Molecular weight: Translated: 34493; Mature: 34493

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: PS01095 CHITINASE_18

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTINALMASAAVAMTGVAGTQAVADDFRLGLITPPPHVWTLAAGEFGEALAEASDGAHS
CCHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEECCCCCEEEEECCHHHHHHHHCCCCCCE
VSIFPARQLGNEAEMLQQLQTGALDMAFMTVAEVSNRAPEFGAFYAPYLANDMAHAAAIL
EEEEEHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
RSDEARALLDQLPATVGVVGVGYGSAGMRQILTNGGADSAADLAGQKIRITPFEPILDFY
HCCHHHHHHHHCCHHHEEEEECCCCHHHHHHHHCCCCCCHHHHCCCEEEECCHHHHHHHH
NAFGVAPTPMPLPAVFDALANGQVDGIDMDAELIVLLNYHEHADTMIQTNHMMFPMVGLV
HHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHH
SGRVWAGLTAEDQAMISELMAAAVDSTLDVYVERDGPWLEEIEATGISYQVAGPEFFGDA
CCCCEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCEEEECCHHHHHHH
IETWEAAWTERAGDALAALRSAAAELE
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTINALMASAAVAMTGVAGTQAVADDFRLGLITPPPHVWTLAAGEFGEALAEASDGAHS
CCHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEECCCCCEEEEECCHHHHHHHHCCCCCCE
VSIFPARQLGNEAEMLQQLQTGALDMAFMTVAEVSNRAPEFGAFYAPYLANDMAHAAAIL
EEEEEHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
RSDEARALLDQLPATVGVVGVGYGSAGMRQILTNGGADSAADLAGQKIRITPFEPILDFY
HCCHHHHHHHHCCHHHEEEEECCCCHHHHHHHHCCCCCCHHHHCCCEEEECCHHHHHHHH
NAFGVAPTPMPLPAVFDALANGQVDGIDMDAELIVLLNYHEHADTMIQTNHMMFPMVGLV
HHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHH
SGRVWAGLTAEDQAMISELMAAAVDSTLDVYVERDGPWLEEIEATGISYQVAGPEFFGDA
CCCCEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCEEEECCHHHHHHH
IETWEAAWTERAGDALAALRSAAAELE
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA