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The map label for this gene is nrfC [H]

Identifier: 89053933

GI number: 89053933

Start: 1409552

End: 1410316

Strand: Reverse

Name: nrfC [H]

Synonym: Jann_1442

Alternate gene names: 89053933

Gene position: 1410316-1409552 (Counterclockwise)

Preceding gene: 89053934

Following gene: 89053932

Centisome position: 32.66

GC content: 63.4

Gene sequence:

>765_bases
ATGACCCAGCTTCCCACATCCACCCAAAAGAAACTCGGCCTTGTCATCGACCTCGACACTTGCGTCGGCTGCCACGCCTG
TGTGATCTCCTGCAAAGGCTGGAACACGGAAAACTATGGCGCGCCGCTCTCTGATCAGGACGCCTACGGGGCCAACCCCA
CGGGCACCTTCCTCAACCGCGTGCATTCCTATGAAGTGCAGCCGCTGGCGACCTCAACCAAACCGCATCCGGCGGCCCAA
ACCATCCATTTCCCCAAATCCTGCCTCCACTGCGAAGACGCGCCCTGCGTCACCGTCTGCCCCACCGGCGCCTCCTACAA
GCGCGTGGAAGACGGCATCGTTCTGGTCAACGAGACCGACTGCATCGGCTGTGGCCTTTGTGCCTGGGCCTGCCCTTACG
GCGCGCGCGAACTCGACCAGGACGAAGGCGTGATGAAGAAATGCACCCTCTGCGTCGACCGGATCTACAACGAAAACCTT
GAAGAGGTGGACCGCGTCCCCTCCTGCGTGCGGACCTGCCCCGCAGGCGCGCGCCACTTCGGCGATCTGGGCGATCCCGA
CAGCGACGTCAGCATTCTGGTCAAAGACCGCGGCGGCATCGACCTGATGCCCGAACAGGGCACCAAGCCCGTCAACCAAT
ACCTGCCGCCCCGTCCCAAGGACGACCTGCCGGAATTCGACGTCCTGGCCCCCTACCTTGAACCCGTCACTGAGACCCCC
GGCGGCTTCATCGGCTGGCTCGACCGCGCGCTGGAGAAAATCTGA

Upstream 100 bases:

>100_bases
TAAATATCCCGGGGGGTCCGGGGGGCAGAGCCCCCCGGCCGGTCGCCCCTTCGCCCCAAAGGGCGATTGGGCGAAATACC
GATATCAGCAAGGCATCGCG

Downstream 100 bases:

>100_bases
TGCATCCCGCCCCCTCCGTCATCATCTTCACCACGCTCTCGGGCCTGGGCTTCGGCCTTCTGGTCTTCCTCGGCCTGGGC
ATGCCCTCCAACCTCAGCGC

Product: 4Fe-4S ferredoxin

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MTQLPTSTQKKLGLVIDLDTCVGCHACVISCKGWNTENYGAPLSDQDAYGANPTGTFLNRVHSYEVQPLATSTKPHPAAQ
TIHFPKSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGARELDQDEGVMKKCTLCVDRIYNENL
EEVDRVPSCVRTCPAGARHFGDLGDPDSDVSILVKDRGGIDLMPEQGTKPVNQYLPPRPKDDLPEFDVLAPYLEPVTETP
GGFIGWLDRALEKI

Sequences:

>Translated_254_residues
MTQLPTSTQKKLGLVIDLDTCVGCHACVISCKGWNTENYGAPLSDQDAYGANPTGTFLNRVHSYEVQPLATSTKPHPAAQ
TIHFPKSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGARELDQDEGVMKKCTLCVDRIYNENL
EEVDRVPSCVRTCPAGARHFGDLGDPDSDVSILVKDRGGIDLMPEQGTKPVNQYLPPRPKDDLPEFDVLAPYLEPVTETP
GGFIGWLDRALEKI
>Mature_253_residues
TQLPTSTQKKLGLVIDLDTCVGCHACVISCKGWNTENYGAPLSDQDAYGANPTGTFLNRVHSYEVQPLATSTKPHPAAQT
IHFPKSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGARELDQDEGVMKKCTLCVDRIYNENLE
EVDRVPSCVRTCPAGARHFGDLGDPDSDVSILVKDRGGIDLMPEQGTKPVNQYLPPRPKDDLPEFDVLAPYLEPVTETPG
GFIGWLDRALEKI

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=206, Percent_Identity=34.4660194174757, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1787749, Length=177, Percent_Identity=32.7683615819209, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790326, Length=177, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1787122, Length=172, Percent_Identity=35.4651162790698, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1787872, Length=174, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789370, Length=217, Percent_Identity=30.8755760368664, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI226510944, Length=177, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787478, Length=102, Percent_Identity=37.2549019607843, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787740, Length=102, Percent_Identity=38.2352941176471, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082180, Length=163, Percent_Identity=33.1288343558282, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789067, Length=179, Percent_Identity=31.2849162011173, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI2367245, Length=172, Percent_Identity=30.2325581395349, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788811, Length=171, Percent_Identity=30.4093567251462, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787963, Length=175, Percent_Identity=25.1428571428571, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789079, Length=207, Percent_Identity=28.0193236714976, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27643; Mature: 27511

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
6.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLPTSTQKKLGLVIDLDTCVGCHACVISCKGWNTENYGAPLSDQDAYGANPTGTFLNR
CCCCCCCHHHHCCEEEECHHHHCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
VHSYEVQPLATSTKPHPAAQTIHFPKSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNETD
HHCCCCCCCCCCCCCCCCHHEECCCHHHCCCCCCCEEEECCCCCCCCCCCCCEEEEECCC
CIGCGLCAWACPYGARELDQDEGVMKKCTLCVDRIYNENLEEVDRVPSCVRTCPAGARHF
CCHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHC
GDLGDPDSDVSILVKDRGGIDLMPEQGTKPVNQYLPPRPKDDLPEFDVLAPYLEPVTETP
CCCCCCCCCEEEEEECCCCEEECCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC
GGFIGWLDRALEKI
CHHHHHHHHHHHCC
>Mature Secondary Structure 
TQLPTSTQKKLGLVIDLDTCVGCHACVISCKGWNTENYGAPLSDQDAYGANPTGTFLNR
CCCCCCHHHHCCEEEECHHHHCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
VHSYEVQPLATSTKPHPAAQTIHFPKSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNETD
HHCCCCCCCCCCCCCCCCHHEECCCHHHCCCCCCCEEEECCCCCCCCCCCCCEEEEECCC
CIGCGLCAWACPYGARELDQDEGVMKKCTLCVDRIYNENLEEVDRVPSCVRTCPAGARHF
CCHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHC
GDLGDPDSDVSILVKDRGGIDLMPEQGTKPVNQYLPPRPKDDLPEFDVLAPYLEPVTETP
CCCCCCCCCEEEEEECCCCEEECCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC
GGFIGWLDRALEKI
CHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]