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The map label for this gene is nocR [H]

Identifier: 89053898

GI number: 89053898

Start: 1376516

End: 1377550

Strand: Reverse

Name: nocR [H]

Synonym: Jann_1407

Alternate gene names: 89053898

Gene position: 1377550-1376516 (Counterclockwise)

Preceding gene: 89053900

Following gene: 89053896

Centisome position: 31.9

GC content: 57.87

Gene sequence:

>1035_bases
ATGCACGTTGGACGGGAAAACTCATCATTTCAAATATGCAATTCTTCGCAAGACATCAGAAAAAGTGATATACTTGATGC
CATGTCTATCCGCTTTCGTCAGCTGCAAGCCTTCCACGCCACCTTTGAGACGGGCACCGTCACAGGGGCGGCGACGCTTC
TGGGGATCTCTCAACCCGGCATCTCAAACCTCCTCGCGCAATTGGAACGGGAAACGCGGTTCAAGTTGTTCGAACGGGTC
AAAGGCCGCCTGATCCCAACGCCGGAGGCGGGTGTTCTGTATCAGGAGGTCGACACGGTTGTGCGCGGTCTTGACCATGT
GGGACAGGCCGTCACCGATCTGCAGAACAAGCAGGGCGGGCAGTTACAAGTCGCCTCCCAACACGCGATGTCCTTTGGGT
TCATGCCGAAACTGATCGCGCAATTCGCCAAAACGCGGCCCGATATGTCGATCTCGTTTCAGTCGCAATATTCTAGCAAG
GTGCAGGAATGGGTGATGTCGGGCCTGTTTGAGATTGGCGTTTGTGAAACGCCGCAGCTTTACGACGCGCTCGACACGCA
TCCCTTCCAGGTGGAGATGCAATTGACGCTGCATCCCGACAATCCCCTTGCGCGCCATGACATTCTAACGCCCGAACTCT
GTGGGGCGGAGCCCTTCATAGTGATGGGCCCGGACCACATGACCCACCGCCGCACGCGCGAAGCGTTTCACACCGCTGGC
GTTCCGTGGAACACGCGGGTCCACACGCATCTCTTCAAGAACATGCTGAGTTTTGTGCAGGAAGATATGGGGGTCGCGAT
CCTTGATCCGTTCCTGCTGGACCATGATGAAAGTGGCAGCTTCGTCACCCGCCCGTTCGCGCCCGCGATCCACATGGACA
TGATGGTGATCACATCGGCCACGCGGCCCCTGTCCACATTGGCGCTTGATTTCCTTGACCTCCTGCTGACAGGAATCGCC
CAAAGCGACAGACGCCGTGTCAGCCCATCCAACGCCGCACCGGGGCGGCCGCCTCTTCCAATGGCTGCGCGATGA

Upstream 100 bases:

>100_bases
ATGCCATGGTCGCGCCGCGCGGTCACGGGCAACGAAAGATGCCAGAGCGTGAAGCCGGCGATGATTTGGGACTGATCGGA
CATATTGCTCCCCCAAGCCC

Downstream 100 bases:

>100_bases
TGTCCACCAGGGTCGGACCGTCATGATCAATCGCCTCCGTTAGCGTCGCCTCCAATGCGCCGGGGTCGTCTACCCGCCAC
GCCTTCACGCCATAAGCACT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MHVGRENSSFQICNSSQDIRKSDILDAMSIRFRQLQAFHATFETGTVTGAATLLGISQPGISNLLAQLERETRFKLFERV
KGRLIPTPEAGVLYQEVDTVVRGLDHVGQAVTDLQNKQGGQLQVASQHAMSFGFMPKLIAQFAKTRPDMSISFQSQYSSK
VQEWVMSGLFEIGVCETPQLYDALDTHPFQVEMQLTLHPDNPLARHDILTPELCGAEPFIVMGPDHMTHRRTREAFHTAG
VPWNTRVHTHLFKNMLSFVQEDMGVAILDPFLLDHDESGSFVTRPFAPAIHMDMMVITSATRPLSTLALDFLDLLLTGIA
QSDRRRVSPSNAAPGRPPLPMAAR

Sequences:

>Translated_344_residues
MHVGRENSSFQICNSSQDIRKSDILDAMSIRFRQLQAFHATFETGTVTGAATLLGISQPGISNLLAQLERETRFKLFERV
KGRLIPTPEAGVLYQEVDTVVRGLDHVGQAVTDLQNKQGGQLQVASQHAMSFGFMPKLIAQFAKTRPDMSISFQSQYSSK
VQEWVMSGLFEIGVCETPQLYDALDTHPFQVEMQLTLHPDNPLARHDILTPELCGAEPFIVMGPDHMTHRRTREAFHTAG
VPWNTRVHTHLFKNMLSFVQEDMGVAILDPFLLDHDESGSFVTRPFAPAIHMDMMVITSATRPLSTLALDFLDLLLTGIA
QSDRRRVSPSNAAPGRPPLPMAAR
>Mature_344_residues
MHVGRENSSFQICNSSQDIRKSDILDAMSIRFRQLQAFHATFETGTVTGAATLLGISQPGISNLLAQLERETRFKLFERV
KGRLIPTPEAGVLYQEVDTVVRGLDHVGQAVTDLQNKQGGQLQVASQHAMSFGFMPKLIAQFAKTRPDMSISFQSQYSSK
VQEWVMSGLFEIGVCETPQLYDALDTHPFQVEMQLTLHPDNPLARHDILTPELCGAEPFIVMGPDHMTHRRTREAFHTAG
VPWNTRVHTHLFKNMLSFVQEDMGVAILDPFLLDHDESGSFVTRPFAPAIHMDMMVITSATRPLSTLALDFLDLLLTGIA
QSDRRRVSPSNAAPGRPPLPMAAR

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=293, Percent_Identity=30.3754266211604, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1788481, Length=197, Percent_Identity=27.9187817258883, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI145693105, Length=288, Percent_Identity=22.2222222222222, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI157672245, Length=213, Percent_Identity=24.8826291079812, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081904, Length=223, Percent_Identity=26.0089686098655, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=256, Percent_Identity=24.609375, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 38304; Mature: 38304

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVGRENSSFQICNSSQDIRKSDILDAMSIRFRQLQAFHATFETGTVTGAATLLGISQPG
CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEECCCCC
ISNLLAQLERETRFKLFERVKGRLIPTPEAGVLYQEVDTVVRGLDHVGQAVTDLQNKQGG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QLQVASQHAMSFGFMPKLIAQFAKTRPDMSISFQSQYSSKVQEWVMSGLFEIGVCETPQL
EEEEHHHHHHHHCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHH
YDALDTHPFQVEMQLTLHPDNPLARHDILTPELCGAEPFIVMGPDHMTHRRTREAFHTAG
HHHHCCCCEEEEEEEEECCCCCCHHHCCCCHHHCCCCCEEEECCCHHHHHHHHHHHHHCC
VPWNTRVHTHLFKNMLSFVQEDMGVAILDPFLLDHDESGSFVTRPFAPAIHMDMMVITSA
CCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHCCCCCCCEEECCCCCHHHHHHHHHHCC
TRPLSTLALDFLDLLLTGIAQSDRRRVSPSNAAPGRPPLPMAAR
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHVGRENSSFQICNSSQDIRKSDILDAMSIRFRQLQAFHATFETGTVTGAATLLGISQPG
CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEECCCCC
ISNLLAQLERETRFKLFERVKGRLIPTPEAGVLYQEVDTVVRGLDHVGQAVTDLQNKQGG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QLQVASQHAMSFGFMPKLIAQFAKTRPDMSISFQSQYSSKVQEWVMSGLFEIGVCETPQL
EEEEHHHHHHHHCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHH
YDALDTHPFQVEMQLTLHPDNPLARHDILTPELCGAEPFIVMGPDHMTHRRTREAFHTAG
HHHHCCCCEEEEEEEEECCCCCCHHHCCCCHHHCCCCCEEEECCCHHHHHHHHHHHHHCC
VPWNTRVHTHLFKNMLSFVQEDMGVAILDPFLLDHDESGSFVTRPFAPAIHMDMMVITSA
CCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHCCCCCCCEEECCCCCHHHHHHHHHHCC
TRPLSTLALDFLDLLLTGIAQSDRRRVSPSNAAPGRPPLPMAAR
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]