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The map label for this gene is araD [H]

Identifier: 89053877

GI number: 89053877

Start: 1355814

End: 1356479

Strand: Reverse

Name: araD [H]

Synonym: Jann_1386

Alternate gene names: 89053877

Gene position: 1356479-1355814 (Counterclockwise)

Preceding gene: 89053878

Following gene: 89053870

Centisome position: 31.41

GC content: 63.51

Gene sequence:

>666_bases
ATGTCTGACTACCCCGACCTCCACGACGTCATGGACGCCCTGATCGCCACCGCAAAACGCTGCTTTGTGGGCGGTTTGCA
GACCAATGCGGGCGGCAACCTGTCAGCGCGGCTGGCCAGCCGGGATGCCATCGTCATCAAACCGTCCGGCGTTGGGTTCA
ACGAATGCACACGCGATAACCTGCAGGTGGTGATGCTGGACGGGACGATCCTGCCATCGGAGGTGGCGCTGAAACCGTCC
AAGGACCTGGATTTCCACCTGGATCTCTACCGCATCCGAGAGGATATCAACGCCATCGTCCACTGCCACAGCCCCTGGGC
CACGGGCTATGCCAGCGCGGGGATTGAGATCCCGTGCCTCACGGTCCAGACCATCGAGAAGATCGGGCGGATGCCGCTGA
TCCCGCTGTCATCGAACGGCGGCCCCCAGACGGAGGTGGAGATCAGCCCCGTGTTCCGCGACCCCAACATTCGCGCCGCT
GTGCTGGCCAATCACGGCACGATCGGGGCCGGGCCGACGCTGATGGCCGCGCAATATCTGGCAGAGATCATCGAGGAAAC
AGCCCATATCGCCTATGTCCGCGATACCCTCATGGCCGCTCATGGCAAGACCCAGGCGGACCTGCCACAATACGGCACGG
CAGCGGATGCGCGCGCGGCTGGATAA

Upstream 100 bases:

>100_bases
ACCCGCATCCCCCACCACATCAACACGCCCGAAACCGCCAAGGCGGTTGTCGAGGCGCTGAACATCGCGCTGGACGCCAG
CACAACCCAAAGGACCGAGC

Downstream 100 bases:

>100_bases
ATCACTGCGCTTCCAAATATCGAAAAAGCCGCGCCCAATCGGGACGCGGCTTTTTCAATGGAGGTTTCGTTAGGTCGTTA
CGTATACCTCACGGCCCCTA

Product: class II aldolase/adducin-like protein

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MSDYPDLHDVMDALIATAKRCFVGGLQTNAGGNLSARLASRDAIVIKPSGVGFNECTRDNLQVVMLDGTILPSEVALKPS
KDLDFHLDLYRIREDINAIVHCHSPWATGYASAGIEIPCLTVQTIEKIGRMPLIPLSSNGGPQTEVEISPVFRDPNIRAA
VLANHGTIGAGPTLMAAQYLAEIIEETAHIAYVRDTLMAAHGKTQADLPQYGTAADARAAG

Sequences:

>Translated_221_residues
MSDYPDLHDVMDALIATAKRCFVGGLQTNAGGNLSARLASRDAIVIKPSGVGFNECTRDNLQVVMLDGTILPSEVALKPS
KDLDFHLDLYRIREDINAIVHCHSPWATGYASAGIEIPCLTVQTIEKIGRMPLIPLSSNGGPQTEVEISPVFRDPNIRAA
VLANHGTIGAGPTLMAAQYLAEIIEETAHIAYVRDTLMAAHGKTQADLPQYGTAADARAAG
>Mature_220_residues
SDYPDLHDVMDALIATAKRCFVGGLQTNAGGNLSARLASRDAIVIKPSGVGFNECTRDNLQVVMLDGTILPSEVALKPSK
DLDFHLDLYRIREDINAIVHCHSPWATGYASAGIEIPCLTVQTIEKIGRMPLIPLSSNGGPQTEVEISPVFRDPNIRAAV
LANHGTIGAGPTLMAAQYLAEIIEETAHIAYVRDTLMAAHGKTQADLPQYGTAADARAAG

Specific function: Unknown

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789094, Length=200, Percent_Identity=30, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790642, Length=182, Percent_Identity=32.4175824175824, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790008, Length=178, Percent_Identity=33.1460674157303, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786247, Length=194, Percent_Identity=31.9587628865979, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789164, Length=167, Percent_Identity=28.1437125748503, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 23559; Mature: 23428

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDYPDLHDVMDALIATAKRCFVGGLQTNAGGNLSARLASRDAIVIKPSGVGFNECTRDN
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEECCCCCHHHCCCCC
LQVVMLDGTILPSEVALKPSKDLDFHLDLYRIREDINAIVHCHSPWATGYASAGIEIPCL
CEEEEECCEECCHHEECCCCCCCCEEHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEEEE
TVQTIEKIGRMPLIPLSSNGGPQTEVEISPVFRDPNIRAAVLANHGTIGAGPTLMAAQYL
HHHHHHHHCCCCEEEECCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHH
AEIIEETAHIAYVRDTLMAAHGKTQADLPQYGTAADARAAG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDYPDLHDVMDALIATAKRCFVGGLQTNAGGNLSARLASRDAIVIKPSGVGFNECTRDN
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEECCCCCHHHCCCCC
LQVVMLDGTILPSEVALKPSKDLDFHLDLYRIREDINAIVHCHSPWATGYASAGIEIPCL
CEEEEECCEECCHHEECCCCCCCCEEHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEEEE
TVQTIEKIGRMPLIPLSSNGGPQTEVEISPVFRDPNIRAAVLANHGTIGAGPTLMAAQYL
HHHHHHHHCCCCEEEECCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHH
AEIIEETAHIAYVRDTLMAAHGKTQADLPQYGTAADARAAG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA