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The map label for this gene is yiaN [C]

Identifier: 89053829

GI number: 89053829

Start: 1304292

End: 1305605

Strand: Reverse

Name: yiaN [C]

Synonym: Jann_1338

Alternate gene names: 89053829

Gene position: 1305605-1304292 (Counterclockwise)

Preceding gene: 89053830

Following gene: 89053807

Centisome position: 30.24

GC content: 61.8

Gene sequence:

>1314_bases
ATGTTTGAGGGTCTGATCGGGTTCGTGGCCGTCCTGGCGCTTGTCTTGCTACGCCTGCCAATCGCCTTCGCGATGGGGTT
CGTCGGCATGATAGGCTTCATGATCGACAGCAATTTCCGCGCCTCCATCTCCATGGTCGCGCGGCTGATCATCGACACCA
GCCAGAATTATGGCCTGTCGGTCGTGCCGCTGTTCATCCTGATGGGTCTGTTCGTCAACAAGGCGGGCATCAGCCGAGAG
CTTTATGCCGCCTCCAATGCCTTCCTTGGCCATTTGCGTGGCGGGCTGGCAATGGCAACAATCGTGGCCTGTGGCGGGTT
TGCTGCCATCTCGGGCTCCTCTCTCGCCACGGCCGCCACGATGTCCAAAGTCGCAATGCCCGAGATGCGCCGCCACGGCT
ATGCCGATGGGCTGGCCACGGCCTCCATCGCGGCAGGTGGCACGCTCGGCATCCTGATCCCGCCCTCTGTGATCCTTGTC
ATCTATGGCCTGCTGACCGAGACCTCCATCGGCCAGCTGTTCATTGCGGGGATCATCCCCGGGGCGCTTGGCATCGTTTT
CTACCTCGGCGCGGTCAGGTTTTCCGTTTGGCGCAAGCCGGAAAGTGGCCCCGCTGGCCCCAGAACACCGCTGCCCGCGC
GCTTGAAAAGCCTGCGAGAGGTTTGGGCGGTCCTGTTGCTTTTCTTCCTCGTTATCGGCGGGCTTTACGGCGTGTTCGAC
GTGGCGCCGCTGAACCTGACCTTCTCCCCCACGGAAGCCGCCGGAATGGGCGCCATGGGCGCGTTCCTGATCGCGCTCGC
GCGGCGCCGCCTGTCTTTCGCGGACACGGTTGAGGTATTGGTCGAAACCTCAAAGACAACCGCATCACTCTTCGCGGTCC
TGATCGGCGCTTGGATTTTCTCAAACTTCGTCAACGTCGCGGGCCTGCCGCAGGGCCTGTCCGAATTGGTGACAACCTAC
AACCTCGCCCCCTGGGCCGTCATGGCACTCATCATGCTGATCTACATCGTCCTGGGCTGCGTGTTCGAGAGCCTTTCGAT
GCTGCTGCTGACGGTGCCGATCTTCTTCCCGGTCGTCACAGGCCTGGGGTTCGATCCGGTCTGGTTCGGCATCGTCGTCG
TCGTGGTGGTGGAGATCAGCCTGATCACCCCACCTGTGGGCCTGAACGTTTTCGTGTTGAAAGGCGTGGTGGGCGACGTG
TCCACCGGCACCATCTTCAGGGCGGTCACACCGTTCTGGATGGCTGATATCGTGCGACTGCTGCTTTTGCTGGCGCTGCC
TGGCCTGGTTCTGTTCCTGCCAAGCCAGATGTAG

Upstream 100 bases:

>100_bases
TATCTCGGCTGGTTCATTGCCGTCATGATCGGCATCACCGCCCTTGTCCTCATTTTGCGCGGGCTCATGTGGGCCTTTGC
GCCACAACTGGTGCCATCTG

Downstream 100 bases:

>100_bases
CCTTATGGGTTTGGCACCATCGCCAGAACACGCAGCGGGCTGCCGGTGCCGTTCTTGATCTTGAGCGGCGGCGCAATCAG
CACGGCGCCAGTGGGCGGCA

Product: TRAP C4-dicarboxylate transport system permease DctM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MFEGLIGFVAVLALVLLRLPIAFAMGFVGMIGFMIDSNFRASISMVARLIIDTSQNYGLSVVPLFILMGLFVNKAGISRE
LYAASNAFLGHLRGGLAMATIVACGGFAAISGSSLATAATMSKVAMPEMRRHGYADGLATASIAAGGTLGILIPPSVILV
IYGLLTETSIGQLFIAGIIPGALGIVFYLGAVRFSVWRKPESGPAGPRTPLPARLKSLREVWAVLLLFFLVIGGLYGVFD
VAPLNLTFSPTEAAGMGAMGAFLIALARRRLSFADTVEVLVETSKTTASLFAVLIGAWIFSNFVNVAGLPQGLSELVTTY
NLAPWAVMALIMLIYIVLGCVFESLSMLLLTVPIFFPVVTGLGFDPVWFGIVVVVVVEISLITPPVGLNVFVLKGVVGDV
STGTIFRAVTPFWMADIVRLLLLLALPGLVLFLPSQM

Sequences:

>Translated_437_residues
MFEGLIGFVAVLALVLLRLPIAFAMGFVGMIGFMIDSNFRASISMVARLIIDTSQNYGLSVVPLFILMGLFVNKAGISRE
LYAASNAFLGHLRGGLAMATIVACGGFAAISGSSLATAATMSKVAMPEMRRHGYADGLATASIAAGGTLGILIPPSVILV
IYGLLTETSIGQLFIAGIIPGALGIVFYLGAVRFSVWRKPESGPAGPRTPLPARLKSLREVWAVLLLFFLVIGGLYGVFD
VAPLNLTFSPTEAAGMGAMGAFLIALARRRLSFADTVEVLVETSKTTASLFAVLIGAWIFSNFVNVAGLPQGLSELVTTY
NLAPWAVMALIMLIYIVLGCVFESLSMLLLTVPIFFPVVTGLGFDPVWFGIVVVVVVEISLITPPVGLNVFVLKGVVGDV
STGTIFRAVTPFWMADIVRLLLLLALPGLVLFLPSQM
>Mature_437_residues
MFEGLIGFVAVLALVLLRLPIAFAMGFVGMIGFMIDSNFRASISMVARLIIDTSQNYGLSVVPLFILMGLFVNKAGISRE
LYAASNAFLGHLRGGLAMATIVACGGFAAISGSSLATAATMSKVAMPEMRRHGYADGLATASIAAGGTLGILIPPSVILV
IYGLLTETSIGQLFIAGIIPGALGIVFYLGAVRFSVWRKPESGPAGPRTPLPARLKSLREVWAVLLLFFLVIGGLYGVFD
VAPLNLTFSPTEAAGMGAMGAFLIALARRRLSFADTVEVLVETSKTTASLFAVLIGAWIFSNFVNVAGLPQGLSELVTTY
NLAPWAVMALIMLIYIVLGCVFESLSMLLLTVPIFFPVVTGLGFDPVWFGIVVVVVVEISLITPPVGLNVFVLKGVVGDV
STGTIFRAVTPFWMADIVRLLLLLALPGLVLFLPSQM

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=388, Percent_Identity=29.3814432989691, Blast_Score=134, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 46185; Mature: 46185

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEGLIGFVAVLALVLLRLPIAFAMGFVGMIGFMIDSNFRASISMVARLIIDTSQNYGLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCH
VVPLFILMGLFVNKAGISRELYAASNAFLGHLRGGLAMATIVACGGFAAISGSSLATAAT
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHH
MSKVAMPEMRRHGYADGLATASIAAGGTLGILIPPSVILVIYGLLTETSIGQLFIAGIIP
HHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHH
GALGIVFYLGAVRFSVWRKPESGPAGPRTPLPARLKSLREVWAVLLLFFLVIGGLYGVFD
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAPLNLTFSPTEAAGMGAMGAFLIALARRRLSFADTVEVLVETSKTTASLFAVLIGAWIF
CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
SNFVNVAGLPQGLSELVTTYNLAPWAVMALIMLIYIVLGCVFESLSMLLLTVPIFFPVVT
HHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGFDPVWFGIVVVVVVEISLITPPVGLNVFVLKGVVGDVSTGTIFRAVTPFWMADIVRL
CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHEEHHHHCCCCCCHHHHHHHHHHHHHHHHH
LLLLALPGLVLFLPSQM
HHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFEGLIGFVAVLALVLLRLPIAFAMGFVGMIGFMIDSNFRASISMVARLIIDTSQNYGLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCH
VVPLFILMGLFVNKAGISRELYAASNAFLGHLRGGLAMATIVACGGFAAISGSSLATAAT
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHH
MSKVAMPEMRRHGYADGLATASIAAGGTLGILIPPSVILVIYGLLTETSIGQLFIAGIIP
HHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHH
GALGIVFYLGAVRFSVWRKPESGPAGPRTPLPARLKSLREVWAVLLLFFLVIGGLYGVFD
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAPLNLTFSPTEAAGMGAMGAFLIALARRRLSFADTVEVLVETSKTTASLFAVLIGAWIF
CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
SNFVNVAGLPQGLSELVTTYNLAPWAVMALIMLIYIVLGCVFESLSMLLLTVPIFFPVVT
HHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGFDPVWFGIVVVVVVEISLITPPVGLNVFVLKGVVGDVSTGTIFRAVTPFWMADIVRL
CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHEEHHHHCCCCCCHHHHHHHHHHHHHHHHH
LLLLALPGLVLFLPSQM
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]