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The map label for this gene is ycfH [C]

Identifier: 89053766

GI number: 89053766

Start: 1235564

End: 1236367

Strand: Reverse

Name: ycfH [C]

Synonym: Jann_1275

Alternate gene names: 89053766

Gene position: 1236367-1235564 (Counterclockwise)

Preceding gene: 89053767

Following gene: 89053765

Centisome position: 28.63

GC content: 63.81

Gene sequence:

>804_bases
ATGAGCACGCCTGCACTCGTAGACAGCCACTGCCACCTGGACTTCGACAGCCTCTCCGCAGAGCTGCCGGATGTCATCGC
GCGCGCCTTGGATGCGGGCGTCACACGCATGATAACCATCTGTACCCGCTTGAAAAATACGCCGCAGGTCCAGGCAATCG
CCGAGGCCCACGCGCCTGTCTTCTGGGCCGGTGGCACCCACCCGATGTCCGCCGCTGACGAGCCCATGGCGACGCTGGAT
CAGCTGGAAACCTTGGCGCTGCACCCCAAGTTCGTGGGCATCGGAGAGACGGGGCTGGACTACCATTACACCGCCGACAG
CAAGGCCGTGCAGCAGGACAGCCTGCGCCTGCATATCGAGGCCGCGCGGCGCACGAAGCTGCCCCTGATCATCCATTCCC
GTGATGCCGACGACGACATGGCGCGTATCCTGTCTGAAGAACACGCCAATGATGCGTTCACCTGCGTCATGCATTGCTTC
AGTTCAACCGCCGCACTGGCCCAGACGGCGCTGGATCTGGGCTTTTATCTGTCCATGTCCGGCATCACCGCCTTCCCCAA
GTCTCAGGAATTGCGCGATATTTTCAGGAGCGCCCCGCTGGATCGCATCCTTGTGGAAACCGACAGCCCCTACCTCGCCC
CGCCGCCCCATCGCGGCAAACGCAATGAGCCCGCCTTCACCGCCCACACCGCGCGGGCAGCGGCGGAGACCTTTGGCGTC
AGCTACGCAGACTTCGCGCGCCAGACGACCGAGAACTTCGACCGCCTGTTCTGGAAAGCCGCACCGGGGCCCAGCAATGG
CTGA

Upstream 100 bases:

>100_bases
CGGCGTGGCAAGGCGGTCAACCTTGACCCTGCGGCGCTGGTGTTTGATATCTTCCTCGACCTGGACCGGATGGCGGCCCG
GCTGGCCGCATGAGGATCCG

Downstream 100 bases:

>100_bases
GTTGCGCTTCACCATCCTGGGCTGCGGCTCCTCGGGCGGTGTGCCGCGACTGGGTGGCCATTGGGGGGAATGTGATCCGG
CGAACCCGAGAAACGCACGG

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSTPALVDSHCHLDFDSLSAELPDVIARALDAGVTRMITICTRLKNTPQVQAIAEAHAPVFWAGGTHPMSAADEPMATLD
QLETLALHPKFVGIGETGLDYHYTADSKAVQQDSLRLHIEAARRTKLPLIIHSRDADDDMARILSEEHANDAFTCVMHCF
SSTAALAQTALDLGFYLSMSGITAFPKSQELRDIFRSAPLDRILVETDSPYLAPPPHRGKRNEPAFTAHTARAAAETFGV
SYADFARQTTENFDRLFWKAAPGPSNG

Sequences:

>Translated_267_residues
MSTPALVDSHCHLDFDSLSAELPDVIARALDAGVTRMITICTRLKNTPQVQAIAEAHAPVFWAGGTHPMSAADEPMATLD
QLETLALHPKFVGIGETGLDYHYTADSKAVQQDSLRLHIEAARRTKLPLIIHSRDADDDMARILSEEHANDAFTCVMHCF
SSTAALAQTALDLGFYLSMSGITAFPKSQELRDIFRSAPLDRILVETDSPYLAPPPHRGKRNEPAFTAHTARAAAETFGV
SYADFARQTTENFDRLFWKAAPGPSNG
>Mature_266_residues
STPALVDSHCHLDFDSLSAELPDVIARALDAGVTRMITICTRLKNTPQVQAIAEAHAPVFWAGGTHPMSAADEPMATLDQ
LETLALHPKFVGIGETGLDYHYTADSKAVQQDSLRLHIEAARRTKLPLIIHSRDADDDMARILSEEHANDAFTCVMHCFS
STAALAQTALDLGFYLSMSGITAFPKSQELRDIFRSAPLDRILVETDSPYLAPPPHRGKRNEPAFTAHTARAAAETFGVS
YADFARQTTENFDRLFWKAAPGPSNG

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI226061853, Length=277, Percent_Identity=29.2418772563177, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI110349730, Length=269, Percent_Identity=28.2527881040892, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI110349734, Length=269, Percent_Identity=28.6245353159851, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI226061614, Length=259, Percent_Identity=27.7992277992278, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI225903424, Length=269, Percent_Identity=27.5092936802974, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI14042943, Length=200, Percent_Identity=26.5, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI226061595, Length=232, Percent_Identity=28.8793103448276, Blast_Score=75, Evalue=8e-14,
Organism=Escherichia coli, GI1787342, Length=255, Percent_Identity=43.921568627451, Blast_Score=200, Evalue=8e-53,
Organism=Escherichia coli, GI48994985, Length=257, Percent_Identity=29.1828793774319, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI87082439, Length=221, Percent_Identity=32.579185520362, Blast_Score=115, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17559024, Length=285, Percent_Identity=28.0701754385965, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI71980746, Length=270, Percent_Identity=28.5185185185185, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17565396, Length=301, Percent_Identity=28.2392026578073, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17543026, Length=296, Percent_Identity=26.3513513513513, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648690, Length=235, Percent_Identity=30.2127659574468, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24586117, Length=215, Percent_Identity=31.6279069767442, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI221330018, Length=215, Percent_Identity=31.6279069767442, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29160; Mature: 29029

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPALVDSHCHLDFDSLSAELPDVIARALDAGVTRMITICTRLKNTPQVQAIAEAHAPV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCE
FWAGGTHPMSAADEPMATLDQLETLALHPKFVGIGETGLDYHYTADSKAVQQDSLRLHIE
EECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCHHHHHCCEEEEEE
AARRTKLPLIIHSRDADDDMARILSEEHANDAFTCVMHCFSSTAALAQTALDLGFYLSMS
EHHCCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
GITAFPKSQELRDIFRSAPLDRILVETDSPYLAPPPHRGKRNEPAFTAHTARAAAETFGV
CCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCC
SYADFARQTTENFDRLFWKAAPGPSNG
HHHHHHHHHHHHHHHHEEECCCCCCCC
>Mature Secondary Structure 
STPALVDSHCHLDFDSLSAELPDVIARALDAGVTRMITICTRLKNTPQVQAIAEAHAPV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCE
FWAGGTHPMSAADEPMATLDQLETLALHPKFVGIGETGLDYHYTADSKAVQQDSLRLHIE
EECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCHHHHHCCEEEEEE
AARRTKLPLIIHSRDADDDMARILSEEHANDAFTCVMHCFSSTAALAQTALDLGFYLSMS
EHHCCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
GITAFPKSQELRDIFRSAPLDRILVETDSPYLAPPPHRGKRNEPAFTAHTARAAAETFGV
CCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCC
SYADFARQTTENFDRLFWKAAPGPSNG
HHHHHHHHHHHHHHHHEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]