| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053763
Identifier: 89053763
GI number: 89053763
Start: 1232783
End: 1233838
Strand: Direct
Name: 89053763
Synonym: Jann_1272
Alternate gene names: NA
Gene position: 1232783-1233838 (Clockwise)
Preceding gene: 89053762
Following gene: 89053772
Centisome position: 28.55
GC content: 63.54
Gene sequence:
>1056_bases GTGCCCTATTCGATTTACATGCTGCCCGAAGGCTTGATGACCGTGACCGGCACCAATGGGGGCAACGGTCTGGATGGTCA GAACCAGGGCTCGGGCGTGCATCTTTCACCCACATCCACCACGCCGGGTGCGACGATCACGCTCAATTCGAATGCGTGGC AAGAGATTGAGATCAACGACAATGACACCAGTTTTGGTGACAATGACGGCGGCCAGCGGCTGGTGAACTCGGAAACGGTG GAGACATCGCCGGGTGTGTTCGAGACCTTCAACGTCAACACCAGGGTAGAGGCGGAATATTCCATCGTCGTCGAAGACCC TGGTGGGGTGCAATACACGCTGGCGGCGTTCAACTTTTCCACAGGGTCTCCGTCATACGGAACCGTGGAGGGCTTGGCGT TTATCGGCCCTCAGGGGGGCTTCCCGCCAATCGGCGTGCCGCTGACTGTTGTCTCGAACCAGGAAGGTCCCAACTTCGAT GAAGCGACCTATGCCACCCCGATTTGCTTCGCCCAAGGGACACTGATTGCCACGCCCGACGGCGATGTCGCGGTGGAGGA GCTGGCAGTCGGGGGGCTGGTCAGCACCGTCGAGCATGGGGCCGAGCCAATCCGGTGGATCGGCCGTAAGACCTTCCCCG CAAGGGGCGCCTTCGCGCCGGTGGAATTCGCGCCGGGTGCCATTGGCAACACGCGGCGTCTGCGCGTCTCTCGCCAGCAT CGTCTGCTGTTGACCGGCTGGCGGGCCGAGCTGTTGTTCGGCGAAGAGGCGGTGTGGGTCCCCGCGGCCTATTTCCTTGA TCGTCCCGGCGTGCGTGTGGCGGAGGGCGGGGAGGTCACCTATTTCCACGTCTTGCTGGACGGTCACAGAACGCTTCTGG CCGAAGGGGTGGAGGCGGAAAGCCTGCACCCCGGCGACATCGCGCTTTGCGGCATGGGGGCATCGGCGGAAGCGGAACTC TTCGCGATGTTCCCGGAGCTGGAGAGGCTGCGCACCCGCACCATGTCGCGCCCCGCCGTCCGCGCGATTGAGGCGCAGGT TGCCCTCGCCAACTGA
Upstream 100 bases:
>100_bases GGCGGAACGCCGCCTTTGTAAGGCTGCATTCCTTTCCAAGTTGCGGCACGTTTGCCTGTCACTTACGTGGGACGTGCCCC CTTAAAATCGTGGATGACCT
Downstream 100 bases:
>100_bases CCGGACCCTTACGGCAAGATCAGCAACCAGACCGATGCACTCACCACCGTCAGCGCCGTGCCCAAAAGAACGGTCGTCGC CACGACCCGGCGCGCGACCC
Product: hypothetical protein
Products: NA
Alternate protein names: Type I Secretion Target Repeat-Containing Protein; Triple Helix Repeat-Containing Collagen; Peptidase Metallopeptidase; Collagen Triple Helix Repeat; Peroxidase; Bifunctional Hemolysin/Adenylate Cyclase
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MPYSIYMLPEGLMTVTGTNGGNGLDGQNQGSGVHLSPTSTTPGATITLNSNAWQEIEINDNDTSFGDNDGGQRLVNSETV ETSPGVFETFNVNTRVEAEYSIVVEDPGGVQYTLAAFNFSTGSPSYGTVEGLAFIGPQGGFPPIGVPLTVVSNQEGPNFD EATYATPICFAQGTLIATPDGDVAVEELAVGGLVSTVEHGAEPIRWIGRKTFPARGAFAPVEFAPGAIGNTRRLRVSRQH RLLLTGWRAELLFGEEAVWVPAAYFLDRPGVRVAEGGEVTYFHVLLDGHRTLLAEGVEAESLHPGDIALCGMGASAEAEL FAMFPELERLRTRTMSRPAVRAIEAQVALAN
Sequences:
>Translated_351_residues MPYSIYMLPEGLMTVTGTNGGNGLDGQNQGSGVHLSPTSTTPGATITLNSNAWQEIEINDNDTSFGDNDGGQRLVNSETV ETSPGVFETFNVNTRVEAEYSIVVEDPGGVQYTLAAFNFSTGSPSYGTVEGLAFIGPQGGFPPIGVPLTVVSNQEGPNFD EATYATPICFAQGTLIATPDGDVAVEELAVGGLVSTVEHGAEPIRWIGRKTFPARGAFAPVEFAPGAIGNTRRLRVSRQH RLLLTGWRAELLFGEEAVWVPAAYFLDRPGVRVAEGGEVTYFHVLLDGHRTLLAEGVEAESLHPGDIALCGMGASAEAEL FAMFPELERLRTRTMSRPAVRAIEAQVALAN >Mature_350_residues PYSIYMLPEGLMTVTGTNGGNGLDGQNQGSGVHLSPTSTTPGATITLNSNAWQEIEINDNDTSFGDNDGGQRLVNSETVE TSPGVFETFNVNTRVEAEYSIVVEDPGGVQYTLAAFNFSTGSPSYGTVEGLAFIGPQGGFPPIGVPLTVVSNQEGPNFDE ATYATPICFAQGTLIATPDGDVAVEELAVGGLVSTVEHGAEPIRWIGRKTFPARGAFAPVEFAPGAIGNTRRLRVSRQHR LLLTGWRAELLFGEEAVWVPAAYFLDRPGVRVAEGGEVTYFHVLLDGHRTLLAEGVEAESLHPGDIALCGMGASAEAELF AMFPELERLRTRTMSRPAVRAIEAQVALAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37301; Mature: 37170
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYSIYMLPEGLMTVTGTNGGNGLDGQNQGSGVHLSPTSTTPGATITLNSNAWQEIEIND CCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCEEEEEECC NDTSFGDNDGGQRLVNSETVETSPGVFETFNVNTRVEAEYSIVVEDPGGVQYTLAAFNFS CCCCCCCCCCCCEECCCCCEECCCCEEEEEECCEEEEEEEEEEEECCCCCEEEEEEEEEC TGSPSYGTVEGLAFIGPQGGFPPIGVPLTVVSNQEGPNFDEATYATPICFAQGTLIATPD CCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCEEEECCC GDVAVEELAVGGLVSTVEHGAEPIRWIGRKTFPARGAFAPVEFAPGAIGNTRRLRVSRQH CCEEHHHHHHCHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCC RLLLTGWRAELLFGEEAVWVPAAYFLDRPGVRVAEGGEVTYFHVLLDGHRTLLAEGVEAE EEEEEECEEEEEECCCEEEEEEHHHHCCCCCEEECCCCEEEEEEEECCCCEEEECCCCCC SLHPGDIALCGMGASAEAELFAMFPELERLRTRTMSRPAVRAIEAQVALAN CCCCCCEEEEECCCCCCCEEEEECHHHHHHHHHHCCCHHHHEEEEEEEECC >Mature Secondary Structure PYSIYMLPEGLMTVTGTNGGNGLDGQNQGSGVHLSPTSTTPGATITLNSNAWQEIEIND CEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCEEEEEECC NDTSFGDNDGGQRLVNSETVETSPGVFETFNVNTRVEAEYSIVVEDPGGVQYTLAAFNFS CCCCCCCCCCCCEECCCCCEECCCCEEEEEECCEEEEEEEEEEEECCCCCEEEEEEEEEC TGSPSYGTVEGLAFIGPQGGFPPIGVPLTVVSNQEGPNFDEATYATPICFAQGTLIATPD CCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCEEEECCC GDVAVEELAVGGLVSTVEHGAEPIRWIGRKTFPARGAFAPVEFAPGAIGNTRRLRVSRQH CCEEHHHHHHCHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCC RLLLTGWRAELLFGEEAVWVPAAYFLDRPGVRVAEGGEVTYFHVLLDGHRTLLAEGVEAE EEEEEECEEEEEECCCEEEEEEHHHHCCCCCEEECCCCEEEEEEEECCCCEEEECCCCCC SLHPGDIALCGMGASAEAELFAMFPELERLRTRTMSRPAVRAIEAQVALAN CCCCCCEEEEECCCCCCCEEEEECHHHHHHHHHHCCCHHHHEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA