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The map label for this gene is potC [H]

Identifier: 89053762

GI number: 89053762

Start: 1231668

End: 1232681

Strand: Direct

Name: potC [H]

Synonym: Jann_1271

Alternate gene names: 89053762

Gene position: 1231668-1232681 (Clockwise)

Preceding gene: 89053761

Following gene: 89053763

Centisome position: 28.52

GC content: 61.05

Gene sequence:

>1014_bases
ATGGATACCAGACTTCCCCCCTATGCCACATTCGGCCAGCGCCTTTGGTTCTACGGTTTCCGGGTCATTTGCGGGCTGAT
CTTCTTCTTCCTGATCGCGCCGATCCTCACCATCATCCCGCTCAGCTTCAACGCCGAGGATTTCTTTACTTTCACGCCCG
GCATGCTGGCGCTCGATCCCGAGGCCTACAGCTTGCGCCACTACCGCGCGTTCTTCGGGGAGGATGGCTATCCCTGGATC
GGCCTGCTGATCGGTCTGGGCCTTGGGGTGGCGATCACCGTGGTTTTGAAGGTGTGGAAGGGCAGCACCAACTACTTTCC
CATCTTCATCTTCGCGATCATTGGCCTGATTGTCGGCAAACTTTCGGGCCTTGAGGGGGAGGAGTGGATGACGCCGATGC
GCAACTCCCTCCGGATCGCCCCAGTCGCGACGCTTCTGTCGGTGGGGTTCGGGACGCTGGCGGCCATCGGCCTGTCGCAA
AGTCATGTGCCGTTCAAGGGCGCGATCATGGCGATCCTGATCTCGCCCATGATTGTGCCGCTGATCATCTCTGCGGCGGG
GATGTATTTCTTCTATTCGCGCATTGGCCTACAGGGCACCTTCATGGGCGTGGTTCTAGCCCATGCGGCATTGGGCATTC
CCTTCGTAATCATCACCGTCACGGCCACGCTGGTAGGCTTTGACCGATCATTGACGCGGGCGGCGGCGAACCTTGGGGCG
AACCCGGTGACGACGTTCTTCCGGATCCAGATGCCGCTGATCCTGCCGGGCGTGATCTCGGGCGGGTTGTTTGCGTTCAT
CACGTCCTTTGACGAGGTGGTCGTGGTCATCTTCGTGGGCTCCGCCGGGCAGCAAACATTGCCGTGGCAGATGTTCACCG
GCCTGCGGGAACAGATCAGCCCGACAATCCTGGCGGCGGCGACCGTGCTCGTGGCCATCTCGGTCATCCTGCTGACGGTC
GTGGAACTCCTGCGCCAACGGTCAGAACGCCTGCGGGGCATTGCGCCGCATTGA

Upstream 100 bases:

>100_bases
TGTCCTCCACCAAACCGTTTTGCGACGGCACGCATCTGGATGCGGGCTGGACCGACGAAAGCTAACTGCCCGCCGAAGCG
CGCCCTGAAAGGCTGACCCG

Downstream 100 bases:

>100_bases
GGGCGGAACGCCGCCTTTGTAAGGCTGCATTCCTTTCCAAGTTGCGGCACGTTTGCCTGTCACTTACGTGGGACGTGCCC
CCTTAAAATCGTGGATGACC

Product: binding-protein-dependent transport systems inner membrane component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MDTRLPPYATFGQRLWFYGFRVICGLIFFFLIAPILTIIPLSFNAEDFFTFTPGMLALDPEAYSLRHYRAFFGEDGYPWI
GLLIGLGLGVAITVVLKVWKGSTNYFPIFIFAIIGLIVGKLSGLEGEEWMTPMRNSLRIAPVATLLSVGFGTLAAIGLSQ
SHVPFKGAIMAILISPMIVPLIISAAGMYFFYSRIGLQGTFMGVVLAHAALGIPFVIITVTATLVGFDRSLTRAAANLGA
NPVTTFFRIQMPLILPGVISGGLFAFITSFDEVVVVIFVGSAGQQTLPWQMFTGLREQISPTILAAATVLVAISVILLTV
VELLRQRSERLRGIAPH

Sequences:

>Translated_337_residues
MDTRLPPYATFGQRLWFYGFRVICGLIFFFLIAPILTIIPLSFNAEDFFTFTPGMLALDPEAYSLRHYRAFFGEDGYPWI
GLLIGLGLGVAITVVLKVWKGSTNYFPIFIFAIIGLIVGKLSGLEGEEWMTPMRNSLRIAPVATLLSVGFGTLAAIGLSQ
SHVPFKGAIMAILISPMIVPLIISAAGMYFFYSRIGLQGTFMGVVLAHAALGIPFVIITVTATLVGFDRSLTRAAANLGA
NPVTTFFRIQMPLILPGVISGGLFAFITSFDEVVVVIFVGSAGQQTLPWQMFTGLREQISPTILAAATVLVAISVILLTV
VELLRQRSERLRGIAPH
>Mature_337_residues
MDTRLPPYATFGQRLWFYGFRVICGLIFFFLIAPILTIIPLSFNAEDFFTFTPGMLALDPEAYSLRHYRAFFGEDGYPWI
GLLIGLGLGVAITVVLKVWKGSTNYFPIFIFAIIGLIVGKLSGLEGEEWMTPMRNSLRIAPVATLLSVGFGTLAAIGLSQ
SHVPFKGAIMAILISPMIVPLIISAAGMYFFYSRIGLQGTFMGVVLAHAALGIPFVIITVTATLVGFDRSLTRAAANLGA
NPVTTFFRIQMPLILPGVISGGLFAFITSFDEVVVVIFVGSAGQQTLPWQMFTGLREQISPTILAAATVLVAISVILLTV
VELLRQRSERLRGIAPH

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=207, Percent_Identity=27.0531400966184, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787081, Length=127, Percent_Identity=37.007874015748, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787714, Length=190, Percent_Identity=32.1052631578947, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36628; Mature: 36628

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTRLPPYATFGQRLWFYGFRVICGLIFFFLIAPILTIIPLSFNAEDFFTFTPGMLALDP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEECC
EAYSLRHYRAFFGEDGYPWIGLLIGLGLGVAITVVLKVWKGSTNYFPIFIFAIIGLIVGK
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LSGLEGEEWMTPMRNSLRIAPVATLLSVGFGTLAAIGLSQSHVPFKGAIMAILISPMIVP
HCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
LIISAAGMYFFYSRIGLQGTFMGVVLAHAALGIPFVIITVTATLVGFDRSLTRAAANLGA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
NPVTTFFRIQMPLILPGVISGGLFAFITSFDEVVVVIFVGSAGQQTLPWQMFTGLREQIS
CCHHHHHEEECHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHC
PTILAAATVLVAISVILLTVVELLRQRSERLRGIAPH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDTRLPPYATFGQRLWFYGFRVICGLIFFFLIAPILTIIPLSFNAEDFFTFTPGMLALDP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEECC
EAYSLRHYRAFFGEDGYPWIGLLIGLGLGVAITVVLKVWKGSTNYFPIFIFAIIGLIVGK
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LSGLEGEEWMTPMRNSLRIAPVATLLSVGFGTLAAIGLSQSHVPFKGAIMAILISPMIVP
HCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
LIISAAGMYFFYSRIGLQGTFMGVVLAHAALGIPFVIITVTATLVGFDRSLTRAAANLGA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
NPVTTFFRIQMPLILPGVISGGLFAFITSFDEVVVVIFVGSAGQQTLPWQMFTGLREQIS
CCHHHHHEEECHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHC
PTILAAATVLVAISVILLTVVELLRQRSERLRGIAPH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]