| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053758
Identifier: 89053758
GI number: 89053758
Start: 1227800
End: 1228915
Strand: Direct
Name: 89053758
Synonym: Jann_1267
Alternate gene names: NA
Gene position: 1227800-1228915 (Clockwise)
Preceding gene: 89053757
Following gene: 89053759
Centisome position: 28.43
GC content: 63.53
Gene sequence:
>1116_bases ATGAATCTCAAGAGCCTTATGCTCCTGACAACCGGCGCCAGCATGGCCGCCACCGGCGCGATGGCCGACGGCCACATGGC CAGTTCCATGACCCTCGTGTCCTGGGGCGGCGCCTATCAGGCCAGCCAGACCAACGCCTATTCCGATCCCTACGCCGCCA TGCATGACGGTCTGGAGATCATCTGGGACGAAAGCTCGGCCGAGGCCGTGGCCCGTCTGCGCGCCATGAACGAGGCGGGC AACATCACCTGGGACCTCGTGGACGTTGTGGCCGCTGACGCCATCCGCCTCTGCGACGAAGGTCTGGCGATGGAAATCGA CCATGACGAGATGCTGGCCCCGGCCCCCGATGGTACGCCAGCGTCCGAGGATTTCGGCGATCTGATCGTGTCCGACTGCT TCATCCCGCAGATCGTGTATTCCACCACGGTGGGGTATCGCACGGACGTGGCAGAGTGGAACGGCAACACGCCGTCCGAC ATCTGCGCGATTTTCGATACCGAAGCGTTCCCCGGTCAGCGGTCGCTGGAGCGTCGTCCGATCGGCAACCTGGAATGGGC GCTGATCTGTGACGGCGTCGCGATGGAAGATGTCTACGACGTGCTTGAGACGGAAGAGGGTGTGGAGCAAGCCTTCGCAA TGCTCGACACGATCCAGGACCAGACCGTTTGGTGGTCCGCCGGTGCAGACACGCCCCAGCTTCTGGCTGACGGCGAAGTT GTCATGGGCTCCACCTATAACGGTCGTTTGTTCTCTCTGATCGAGGAGCAGGACCAGCCCGTCGCCATGCTGTGGGACGC GCAGGTGTTCGACCTTGACGGTTGGATCATCCCCGAGGGGCTGCCCGAGGATCGCCTGGCCCGTACGCTGGACTTCGTGC GCTTCGCCACGGACACACAGCGTCTGGCCGATCAGTCGCGCTGGATCTCCTACGGTCCCGCACGCGCCTCTTCCGCGCCT CTGGTTGGCACGCATGCCGATCTGGGCATCGAGATGGCACCGCATATGCCAACCGACCCGGCCAATGCCGAGCGGACGTT CCTGTTCAACTACGAGTGGTGGGCCGACTACCGCGACGACATGGACGCCCGTTTCCAGGCGTGGTTGGCGCAATAA
Upstream 100 bases:
>100_bases TGATGGTCAAACGCCCGCCCAAAAACCTCGGGGGATCACCCCGTATGAATACCAGCCTTTTGGGGCATTCGTCCCAGAGG TCCAACCAAGGAGAGACCAC
Downstream 100 bases:
>100_bases GGTCTGAAGGGACGGCGGGTTAAATCCCGCCCGACGCAACATTTCGGACGGGCCGTTTCGGTGGCCCGTCCACACCCCAA GAACAAGGCGGCGCGACATG
Product: polyamine ABC transporter periplasmic polyamine-binding protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 371; Mature: 371
Protein sequence:
>371_residues MNLKSLMLLTTGASMAATGAMADGHMASSMTLVSWGGAYQASQTNAYSDPYAAMHDGLEIIWDESSAEAVARLRAMNEAG NITWDLVDVVAADAIRLCDEGLAMEIDHDEMLAPAPDGTPASEDFGDLIVSDCFIPQIVYSTTVGYRTDVAEWNGNTPSD ICAIFDTEAFPGQRSLERRPIGNLEWALICDGVAMEDVYDVLETEEGVEQAFAMLDTIQDQTVWWSAGADTPQLLADGEV VMGSTYNGRLFSLIEEQDQPVAMLWDAQVFDLDGWIIPEGLPEDRLARTLDFVRFATDTQRLADQSRWISYGPARASSAP LVGTHADLGIEMAPHMPTDPANAERTFLFNYEWWADYRDDMDARFQAWLAQ
Sequences:
>Translated_371_residues MNLKSLMLLTTGASMAATGAMADGHMASSMTLVSWGGAYQASQTNAYSDPYAAMHDGLEIIWDESSAEAVARLRAMNEAG NITWDLVDVVAADAIRLCDEGLAMEIDHDEMLAPAPDGTPASEDFGDLIVSDCFIPQIVYSTTVGYRTDVAEWNGNTPSD ICAIFDTEAFPGQRSLERRPIGNLEWALICDGVAMEDVYDVLETEEGVEQAFAMLDTIQDQTVWWSAGADTPQLLADGEV VMGSTYNGRLFSLIEEQDQPVAMLWDAQVFDLDGWIIPEGLPEDRLARTLDFVRFATDTQRLADQSRWISYGPARASSAP LVGTHADLGIEMAPHMPTDPANAERTFLFNYEWWADYRDDMDARFQAWLAQ >Mature_371_residues MNLKSLMLLTTGASMAATGAMADGHMASSMTLVSWGGAYQASQTNAYSDPYAAMHDGLEIIWDESSAEAVARLRAMNEAG NITWDLVDVVAADAIRLCDEGLAMEIDHDEMLAPAPDGTPASEDFGDLIVSDCFIPQIVYSTTVGYRTDVAEWNGNTPSD ICAIFDTEAFPGQRSLERRPIGNLEWALICDGVAMEDVYDVLETEEGVEQAFAMLDTIQDQTVWWSAGADTPQLLADGEV VMGSTYNGRLFSLIEEQDQPVAMLWDAQVFDLDGWIIPEGLPEDRLARTLDFVRFATDTQRLADQSRWISYGPARASSAP LVGTHADLGIEMAPHMPTDPANAERTFLFNYEWWADYRDDMDARFQAWLAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40855; Mature: 40855
Theoretical pI: Translated: 3.75; Mature: 3.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLKSLMLLTTGASMAATGAMADGHMASSMTLVSWGGAYQASQTNAYSDPYAAMHDGLEI CCCCEEEEEECCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCEEE IWDESSAEAVARLRAMNEAGNITWDLVDVVAADAIRLCDEGLAMEIDHDEMLAPAPDGTP EECCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC ASEDFGDLIVSDCFIPQIVYSTTVGYRTDVAEWNGNTPSDICAIFDTEAFPGQRSLERRP CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHEEEEEECCCCCCCCCCCCCC IGNLEWALICDGVAMEDVYDVLETEEGVEQAFAMLDTIQDQTVWWSAGADTPQLLADGEV CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHEECCCE VMGSTYNGRLFSLIEEQDQPVAMLWDAQVFDLDGWIIPEGLPEDRLARTLDFVRFATDTQ EEECCCCCHHEEEHHCCCCCEEEEECCEEEECCCEECCCCCCHHHHHHHHHHHHHHHHHH RLADQSRWISYGPARASSAPLVGTHADLGIEMAPHMPTDPANAERTFLFNYEWWADYRDD HHHHHHCCEECCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCEEEEEEEHHHCCCCCC MDARFQAWLAQ HHHHHHHHHCC >Mature Secondary Structure MNLKSLMLLTTGASMAATGAMADGHMASSMTLVSWGGAYQASQTNAYSDPYAAMHDGLEI CCCCEEEEEECCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCEEE IWDESSAEAVARLRAMNEAGNITWDLVDVVAADAIRLCDEGLAMEIDHDEMLAPAPDGTP EECCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC ASEDFGDLIVSDCFIPQIVYSTTVGYRTDVAEWNGNTPSDICAIFDTEAFPGQRSLERRP CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHEEEEEECCCCCCCCCCCCCC IGNLEWALICDGVAMEDVYDVLETEEGVEQAFAMLDTIQDQTVWWSAGADTPQLLADGEV CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHEECCCE VMGSTYNGRLFSLIEEQDQPVAMLWDAQVFDLDGWIIPEGLPEDRLARTLDFVRFATDTQ EEECCCCCHHEEEHHCCCCCEEEEECCEEEECCCEECCCCCCHHHHHHHHHHHHHHHHHH RLADQSRWISYGPARASSAPLVGTHADLGIEMAPHMPTDPANAERTFLFNYEWWADYRDD HHHHHHCCEECCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCEEEEEEEHHHCCCCCC MDARFQAWLAQ HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA