Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89053754

Identifier: 89053754

GI number: 89053754

Start: 1223244

End: 1224044

Strand: Direct

Name: 89053754

Synonym: Jann_1263

Alternate gene names: NA

Gene position: 1223244-1224044 (Clockwise)

Preceding gene: 89053753

Following gene: 89053756

Centisome position: 28.33

GC content: 62.92

Gene sequence:

>801_bases
ATGAGCAACGACACGTCACTGCGCGCGATGCAGGCGTGGATGCAGGCGGCACTGATCAACCCGCGCGGCGTGCGGGGGGA
GGAGGTGGCCGCCCGACTTGTCCCCTCCAATCGCCTGTCGGCGGCAGAGCGTCTCGGGATCTATCAGCGCAGCTATATCG
CACGGCTCTGCGCCTGTCTGGCGGAACAATTCCCGGCTTCGCGCCATGCGTTGGGCGACGATCTTTTCGACCAGTTCGCG
CGGGTCTATTTGGCCGAAGATCCGTCGGACAGCTACACGCTGCACGAGCTTGGACGCCGGTTTCCCGCGTTTCTGGACGC
CTCCCGTCCCGATGCGGACGATCCGGAGCCATGGGTGACGTTCATGATAGATCTCGCGCGGTATGAACGCACATTGTTCG
TCCTATTTGACGCGCCGGGCCATGAGGGCAAGCCGTGGCCCACACCCGCAACACCCGATGAAAACCTGATCCTGCAGCCT
TGTTTCGCGCTGGGAGCCTACCAGTTCCCGGTCGCGCATTACTACCACAGCGTCGCCGATCACGCCGAGCCGGGCCTGCC
GCCCCAAACCGACAGCTTCGTGGCGATCACCCGGTGCGATTATCTGACCTCGTCATTTCCGATATCCCGCCAGCATCATC
TGATCCTGACGACAATGCAGGAGACACAAAGTATAGACGCCGTGCTGACGCTGGTGGCGCAGCGGGCGGGCCTGCCGGAG
GCTGAGCTGCGATCCGCCTGGCGCGGTCAGATCCGGGATCGCTGGATTGCCAACCACGTCTTTATTGATCGTCTGACCTG
A

Upstream 100 bases:

>100_bases
TGCACCTGTACCAGGGCGCAGCCGCACCGGGCCGGGCCCGCGTCTCAAATCCGGTGGATCACATCGTCTCACCGGTGCGG
GGCCATTCCCGGCTGGACGC

Downstream 100 bases:

>100_bases
AACTATTCCGCCGCGATCTGCATCGGCACTGGCGCGGCATAGCCATCGCGGGTTTGCGGCACCTTGATCCCAAGGGCGGA
CCCGGCGATCTGCGTCCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MSNDTSLRAMQAWMQAALINPRGVRGEEVAARLVPSNRLSAAERLGIYQRSYIARLCACLAEQFPASRHALGDDLFDQFA
RVYLAEDPSDSYTLHELGRRFPAFLDASRPDADDPEPWVTFMIDLARYERTLFVLFDAPGHEGKPWPTPATPDENLILQP
CFALGAYQFPVAHYYHSVADHAEPGLPPQTDSFVAITRCDYLTSSFPISRQHHLILTTMQETQSIDAVLTLVAQRAGLPE
AELRSAWRGQIRDRWIANHVFIDRLT

Sequences:

>Translated_266_residues
MSNDTSLRAMQAWMQAALINPRGVRGEEVAARLVPSNRLSAAERLGIYQRSYIARLCACLAEQFPASRHALGDDLFDQFA
RVYLAEDPSDSYTLHELGRRFPAFLDASRPDADDPEPWVTFMIDLARYERTLFVLFDAPGHEGKPWPTPATPDENLILQP
CFALGAYQFPVAHYYHSVADHAEPGLPPQTDSFVAITRCDYLTSSFPISRQHHLILTTMQETQSIDAVLTLVAQRAGLPE
AELRSAWRGQIRDRWIANHVFIDRLT
>Mature_265_residues
SNDTSLRAMQAWMQAALINPRGVRGEEVAARLVPSNRLSAAERLGIYQRSYIARLCACLAEQFPASRHALGDDLFDQFAR
VYLAEDPSDSYTLHELGRRFPAFLDASRPDADDPEPWVTFMIDLARYERTLFVLFDAPGHEGKPWPTPATPDENLILQPC
FALGAYQFPVAHYYHSVADHAEPGLPPQTDSFVAITRCDYLTSSFPISRQHHLILTTMQETQSIDAVLTLVAQRAGLPEA
ELRSAWRGQIRDRWIANHVFIDRLT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30025; Mature: 29894

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNDTSLRAMQAWMQAALINPRGVRGEEVAARLVPSNRLSAAERLGIYQRSYIARLCACL
CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
AEQFPASRHALGDDLFDQFARVYLAEDPSDSYTLHELGRRFPAFLDASRPDADDPEPWVT
HHHCCCHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
FMIDLARYERTLFVLFDAPGHEGKPWPTPATPDENLILQPCFALGAYQFPVAHYYHSVAD
HHHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCCCEEEHHHHHHCCHHHHHHHHHHHHHH
HAEPGLPPQTDSFVAITRCDYLTSSFPISRQHHLILTTMQETQSIDAVLTLVAQRAGLPE
HCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCH
AELRSAWRGQIRDRWIANHVFIDRLT
HHHHHHHHHHHHHHHHHHHEEEECCC
>Mature Secondary Structure 
SNDTSLRAMQAWMQAALINPRGVRGEEVAARLVPSNRLSAAERLGIYQRSYIARLCACL
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
AEQFPASRHALGDDLFDQFARVYLAEDPSDSYTLHELGRRFPAFLDASRPDADDPEPWVT
HHHCCCHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
FMIDLARYERTLFVLFDAPGHEGKPWPTPATPDENLILQPCFALGAYQFPVAHYYHSVAD
HHHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCCCEEEHHHHHHCCHHHHHHHHHHHHHH
HAEPGLPPQTDSFVAITRCDYLTSSFPISRQHHLILTTMQETQSIDAVLTLVAQRAGLPE
HCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCH
AELRSAWRGQIRDRWIANHVFIDRLT
HHHHHHHHHHHHHHHHHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA