| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is yedA [C]
Identifier: 89053727
GI number: 89053727
Start: 1191679
End: 1192602
Strand: Reverse
Name: yedA [C]
Synonym: Jann_1236
Alternate gene names: 89053727
Gene position: 1192602-1191679 (Counterclockwise)
Preceding gene: 89053728
Following gene: 89053722
Centisome position: 27.62
GC content: 66.34
Gene sequence:
>924_bases ATGACCGCCCCGTCGCCCGCACGCCCGGGGCTGAAAAACTGGCTCCTCATCATCAGTCTCGGCATCATTTGGGGCACCGC CTTCATGGGCACGTCCCTGGCGCTGGAGGGGATCAGCATTTGGTGGGTGGCCGCAGGTCGCCTGGCCCTGGCCGCTGCAC TCCTTCTGCCCATCGGCGCATTGATGGGTCAGGGGCTTGGCACCATCCGGGGCGGACGGGCCTGGGGATTTGTGACGATC ATTGGCGTCGGGTCGCTGGCATTGCCGCTGACGCTTTTGGCCTGGGGGCTGAGCTACGTGCCGTCTGCCTTTGCGGGCGT GGCCATGGGGGCGGTTCCGCTGATCGTGCTGCCCCTGGTGGCGATCTTTTCGCGGGACGAAGGGATCGGCCCCCGACGGG TGATCGGCGTGTGTCTGGGCTTTGTCGGCCTTGTTTTACTGGTGGGACCGGGCGCGTTCGAGGACGGGACATTTGCGGGA CGGCTTGCCTGTATCGCCACCGCGGCCTGCTATGCGGCAGGCTCCGTCCTGACGCGCCGCGCGCCGACATTGCCGCCCGT GGCCTTTGCCGGCGCTACATTGCTGATGGGTGCGCTGGTGCTGGTGCCGCTCGCCTGGATCATCGACGGCCCGCCGCAGG TCACGCAATCCTCTGCCGCCTGGGCGCTGATCTACACCGCGATTTTCCCGACAGGCCTCGCCGCGATCATGCGGGTGCGC GTGATCACGACAGCGGGCTCTCTCTTCATGTCATTCACCAGCTATATGGTGCCTGTCTGGGCGGTCCTTTTCGGGGTCAC ACTCATGGGAGAGGCGCTGCCGCCTCAGCTGTTCTGGGCCCTTGGCCTGATCCTGTTGGGGATCGGTATCAGCCAGTCGC GGGCGCTGCTTCAGCAGCTGCGCCCCAGGACCAAGACCGCATAG
Upstream 100 bases:
>100_bases ACGTGGTTCGCTGCTTGACGCGCCCCCCTTGGCGCGCCAAGTCGATGGACATGACCAACACTGTTCCCTCTGCCACCGGC GAAACCATCCGGCAGCGTCG
Downstream 100 bases:
>100_bases CCGTTTCGCTGCGCATAGCCAAACTGGGTCGCGCGTGCGGCCAATATGTTGCGGCGATGCCCGCTGGAGGCCATCCAATC CTGGAACACCTGCGCCGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 307; Mature: 306
Protein sequence:
>307_residues MTAPSPARPGLKNWLLIISLGIIWGTAFMGTSLALEGISIWWVAAGRLALAAALLLPIGALMGQGLGTIRGGRAWGFVTI IGVGSLALPLTLLAWGLSYVPSAFAGVAMGAVPLIVLPLVAIFSRDEGIGPRRVIGVCLGFVGLVLLVGPGAFEDGTFAG RLACIATAACYAAGSVLTRRAPTLPPVAFAGATLLMGALVLVPLAWIIDGPPQVTQSSAAWALIYTAIFPTGLAAIMRVR VITTAGSLFMSFTSYMVPVWAVLFGVTLMGEALPPQLFWALGLILLGIGISQSRALLQQLRPRTKTA
Sequences:
>Translated_307_residues MTAPSPARPGLKNWLLIISLGIIWGTAFMGTSLALEGISIWWVAAGRLALAAALLLPIGALMGQGLGTIRGGRAWGFVTI IGVGSLALPLTLLAWGLSYVPSAFAGVAMGAVPLIVLPLVAIFSRDEGIGPRRVIGVCLGFVGLVLLVGPGAFEDGTFAG RLACIATAACYAAGSVLTRRAPTLPPVAFAGATLLMGALVLVPLAWIIDGPPQVTQSSAAWALIYTAIFPTGLAAIMRVR VITTAGSLFMSFTSYMVPVWAVLFGVTLMGEALPPQLFWALGLILLGIGISQSRALLQQLRPRTKTA >Mature_306_residues TAPSPARPGLKNWLLIISLGIIWGTAFMGTSLALEGISIWWVAAGRLALAAALLLPIGALMGQGLGTIRGGRAWGFVTII GVGSLALPLTLLAWGLSYVPSAFAGVAMGAVPLIVLPLVAIFSRDEGIGPRRVIGVCLGFVGLVLLVGPGAFEDGTFAGR LACIATAACYAAGSVLTRRAPTLPPVAFAGATLLMGALVLVPLAWIIDGPPQVTQSSAAWALIYTAIFPTGLAAIMRVRV ITTAGSLFMSFTSYMVPVWAVLFGVTLMGEALPPQLFWALGLILLGIGISQSRALLQQLRPRTKTA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31757; Mature: 31625
Theoretical pI: Translated: 11.25; Mature: 11.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPSPARPGLKNWLLIISLGIIWGTAFMGTSLALEGISIWWVAAGRLALAAALLLPIGA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH LMGQGLGTIRGGRAWGFVTIIGVGSLALPLTLLAWGLSYVPSAFAGVAMGAVPLIVLPLV HHCCCCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIFSRDEGIGPRRVIGVCLGFVGLVLLVGPGAFEDGTFAGRLACIATAACYAAGSVLTRR HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC APTLPPVAFAGATLLMGALVLVPLAWIIDGPPQVTQSSAAWALIYTAIFPTGLAAIMRVR CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VITTAGSLFMSFTSYMVPVWAVLFGVTLMGEALPPQLFWALGLILLGIGISQSRALLQQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH RPRTKTA CCCCCCC >Mature Secondary Structure TAPSPARPGLKNWLLIISLGIIWGTAFMGTSLALEGISIWWVAAGRLALAAALLLPIGA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH LMGQGLGTIRGGRAWGFVTIIGVGSLALPLTLLAWGLSYVPSAFAGVAMGAVPLIVLPLV HHCCCCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIFSRDEGIGPRRVIGVCLGFVGLVLLVGPGAFEDGTFAGRLACIATAACYAAGSVLTRR HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC APTLPPVAFAGATLLMGALVLVPLAWIIDGPPQVTQSSAAWALIYTAIFPTGLAAIMRVR CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VITTAGSLFMSFTSYMVPVWAVLFGVTLMGEALPPQLFWALGLILLGIGISQSRALLQQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH RPRTKTA CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA