Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

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The map label for this gene is yedA [C]

Identifier: 89053727

GI number: 89053727

Start: 1191679

End: 1192602

Strand: Reverse

Name: yedA [C]

Synonym: Jann_1236

Alternate gene names: 89053727

Gene position: 1192602-1191679 (Counterclockwise)

Preceding gene: 89053728

Following gene: 89053722

Centisome position: 27.62

GC content: 66.34

Gene sequence:

>924_bases
ATGACCGCCCCGTCGCCCGCACGCCCGGGGCTGAAAAACTGGCTCCTCATCATCAGTCTCGGCATCATTTGGGGCACCGC
CTTCATGGGCACGTCCCTGGCGCTGGAGGGGATCAGCATTTGGTGGGTGGCCGCAGGTCGCCTGGCCCTGGCCGCTGCAC
TCCTTCTGCCCATCGGCGCATTGATGGGTCAGGGGCTTGGCACCATCCGGGGCGGACGGGCCTGGGGATTTGTGACGATC
ATTGGCGTCGGGTCGCTGGCATTGCCGCTGACGCTTTTGGCCTGGGGGCTGAGCTACGTGCCGTCTGCCTTTGCGGGCGT
GGCCATGGGGGCGGTTCCGCTGATCGTGCTGCCCCTGGTGGCGATCTTTTCGCGGGACGAAGGGATCGGCCCCCGACGGG
TGATCGGCGTGTGTCTGGGCTTTGTCGGCCTTGTTTTACTGGTGGGACCGGGCGCGTTCGAGGACGGGACATTTGCGGGA
CGGCTTGCCTGTATCGCCACCGCGGCCTGCTATGCGGCAGGCTCCGTCCTGACGCGCCGCGCGCCGACATTGCCGCCCGT
GGCCTTTGCCGGCGCTACATTGCTGATGGGTGCGCTGGTGCTGGTGCCGCTCGCCTGGATCATCGACGGCCCGCCGCAGG
TCACGCAATCCTCTGCCGCCTGGGCGCTGATCTACACCGCGATTTTCCCGACAGGCCTCGCCGCGATCATGCGGGTGCGC
GTGATCACGACAGCGGGCTCTCTCTTCATGTCATTCACCAGCTATATGGTGCCTGTCTGGGCGGTCCTTTTCGGGGTCAC
ACTCATGGGAGAGGCGCTGCCGCCTCAGCTGTTCTGGGCCCTTGGCCTGATCCTGTTGGGGATCGGTATCAGCCAGTCGC
GGGCGCTGCTTCAGCAGCTGCGCCCCAGGACCAAGACCGCATAG

Upstream 100 bases:

>100_bases
ACGTGGTTCGCTGCTTGACGCGCCCCCCTTGGCGCGCCAAGTCGATGGACATGACCAACACTGTTCCCTCTGCCACCGGC
GAAACCATCCGGCAGCGTCG

Downstream 100 bases:

>100_bases
CCGTTTCGCTGCGCATAGCCAAACTGGGTCGCGCGTGCGGCCAATATGTTGCGGCGATGCCCGCTGGAGGCCATCCAATC
CTGGAACACCTGCGCCGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MTAPSPARPGLKNWLLIISLGIIWGTAFMGTSLALEGISIWWVAAGRLALAAALLLPIGALMGQGLGTIRGGRAWGFVTI
IGVGSLALPLTLLAWGLSYVPSAFAGVAMGAVPLIVLPLVAIFSRDEGIGPRRVIGVCLGFVGLVLLVGPGAFEDGTFAG
RLACIATAACYAAGSVLTRRAPTLPPVAFAGATLLMGALVLVPLAWIIDGPPQVTQSSAAWALIYTAIFPTGLAAIMRVR
VITTAGSLFMSFTSYMVPVWAVLFGVTLMGEALPPQLFWALGLILLGIGISQSRALLQQLRPRTKTA

Sequences:

>Translated_307_residues
MTAPSPARPGLKNWLLIISLGIIWGTAFMGTSLALEGISIWWVAAGRLALAAALLLPIGALMGQGLGTIRGGRAWGFVTI
IGVGSLALPLTLLAWGLSYVPSAFAGVAMGAVPLIVLPLVAIFSRDEGIGPRRVIGVCLGFVGLVLLVGPGAFEDGTFAG
RLACIATAACYAAGSVLTRRAPTLPPVAFAGATLLMGALVLVPLAWIIDGPPQVTQSSAAWALIYTAIFPTGLAAIMRVR
VITTAGSLFMSFTSYMVPVWAVLFGVTLMGEALPPQLFWALGLILLGIGISQSRALLQQLRPRTKTA
>Mature_306_residues
TAPSPARPGLKNWLLIISLGIIWGTAFMGTSLALEGISIWWVAAGRLALAAALLLPIGALMGQGLGTIRGGRAWGFVTII
GVGSLALPLTLLAWGLSYVPSAFAGVAMGAVPLIVLPLVAIFSRDEGIGPRRVIGVCLGFVGLVLLVGPGAFEDGTFAGR
LACIATAACYAAGSVLTRRAPTLPPVAFAGATLLMGALVLVPLAWIIDGPPQVTQSSAAWALIYTAIFPTGLAAIMRVRV
ITTAGSLFMSFTSYMVPVWAVLFGVTLMGEALPPQLFWALGLILLGIGISQSRALLQQLRPRTKTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31757; Mature: 31625

Theoretical pI: Translated: 11.25; Mature: 11.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPSPARPGLKNWLLIISLGIIWGTAFMGTSLALEGISIWWVAAGRLALAAALLLPIGA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LMGQGLGTIRGGRAWGFVTIIGVGSLALPLTLLAWGLSYVPSAFAGVAMGAVPLIVLPLV
HHCCCCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIFSRDEGIGPRRVIGVCLGFVGLVLLVGPGAFEDGTFAGRLACIATAACYAAGSVLTRR
HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
APTLPPVAFAGATLLMGALVLVPLAWIIDGPPQVTQSSAAWALIYTAIFPTGLAAIMRVR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VITTAGSLFMSFTSYMVPVWAVLFGVTLMGEALPPQLFWALGLILLGIGISQSRALLQQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
RPRTKTA
CCCCCCC
>Mature Secondary Structure 
TAPSPARPGLKNWLLIISLGIIWGTAFMGTSLALEGISIWWVAAGRLALAAALLLPIGA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LMGQGLGTIRGGRAWGFVTIIGVGSLALPLTLLAWGLSYVPSAFAGVAMGAVPLIVLPLV
HHCCCCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIFSRDEGIGPRRVIGVCLGFVGLVLLVGPGAFEDGTFAGRLACIATAACYAAGSVLTRR
HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
APTLPPVAFAGATLLMGALVLVPLAWIIDGPPQVTQSSAAWALIYTAIFPTGLAAIMRVR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VITTAGSLFMSFTSYMVPVWAVLFGVTLMGEALPPQLFWALGLILLGIGISQSRALLQQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
RPRTKTA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA