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The map label for this gene is ycaN [H]

Identifier: 89053659

GI number: 89053659

Start: 1132645

End: 1133538

Strand: Reverse

Name: ycaN [H]

Synonym: Jann_1168

Alternate gene names: 89053659

Gene position: 1133538-1132645 (Counterclockwise)

Preceding gene: 89053691

Following gene: 89053653

Centisome position: 26.25

GC content: 56.6

Gene sequence:

>894_bases
ATGAACCGTGCGGACCTTAATGGCCTGAGAACGTTTCTTGCGATTGTCGAGTGCGGCACCCTGCGCGCCGCGGGAGATGA
TCTGGGTGTGAACCCGTCGGCGGTTTCTCAGCAGCTCAAGGGCTTTGAGGAGGCCCTTGGCAGCGCGTTGTTCGTTCGTA
GCACGCGTTCTGTGGCGCTCACCGATACCGGTCAGGCGCTCTATGAGCGGACCCATCATCTCATGGACGAGATCGACGCG
GCCCTTGATGCAACACGGCATGCGGCCCGCTCGACATCAGGCCAGTTGCGGATCACCCTGCCTTACAGGGCATGGCAACT
CGCGCTTGCCCCAAGGATCACCGCGTTTCAGGACCACTTTCCCGAAATTGAGCTTGACCTCTCCATTGACGAAGAACTCA
CGGACATTGTTGCTAACGGCTATCATGCCGGAATCCGCCTCGGAGACTACCTGGCCGACGAAATGATAGCGGTCGCTCTT
ACGAAACCGCTCGACGGTGCGTTCGTCGCAAGCAAGGAATACCTGCAAAGGCATGGAGTACCCAAAAGACCCGCTGACCT
ACTCGGTCACGACTGCATCCGATACCGCCAGATTGCATCGAAGAAAGTTGCATCATGGCAGTTCGAAATCGATGGCATGG
AAACCCGGATCGAGGTGTCAGGACGACTGATATTCAGTGATTTGAGATCGGTCATCGATGCAGCGGCCCAGGGCCTGGGA
ATTGGATGGTCCCTTCGGGAAGGGGTTGCGGCCCAAATTGAGTCCGGCGAATTGATTGAAGTTTTACGTGACTACACGCC
TCATCGACCACGCTTCTATCTGTATTTTCCCCGACAGCTTAGAGACATGACAAGCCTTCGGGCGTTCATCGACCACTTCG
CGATTGGTGCCTAG

Upstream 100 bases:

>100_bases
CGGTCATCTGCGGTCTTCCTTAGGGACGCCACACCATACCGAGCTATGATTATACGTCGATCCGGTATAATCTGACTAAT
ATGATTAGAAAAAATACATA

Downstream 100 bases:

>100_bases
ACGAGATGGACGGTTTCCGCGCTTTGCGGACATTCGTGCAAGACGCAGCCTCCGTTAGATTGGGCTCAGCTCTGCCGTAG
AAGTTGTCAGGCAACCGCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNRADLNGLRTFLAIVECGTLRAAGDDLGVNPSAVSQQLKGFEEALGSALFVRSTRSVALTDTGQALYERTHHLMDEIDA
ALDATRHAARSTSGQLRITLPYRAWQLALAPRITAFQDHFPEIELDLSIDEELTDIVANGYHAGIRLGDYLADEMIAVAL
TKPLDGAFVASKEYLQRHGVPKRPADLLGHDCIRYRQIASKKVASWQFEIDGMETRIEVSGRLIFSDLRSVIDAAAQGLG
IGWSLREGVAAQIESGELIEVLRDYTPHRPRFYLYFPRQLRDMTSLRAFIDHFAIGA

Sequences:

>Translated_297_residues
MNRADLNGLRTFLAIVECGTLRAAGDDLGVNPSAVSQQLKGFEEALGSALFVRSTRSVALTDTGQALYERTHHLMDEIDA
ALDATRHAARSTSGQLRITLPYRAWQLALAPRITAFQDHFPEIELDLSIDEELTDIVANGYHAGIRLGDYLADEMIAVAL
TKPLDGAFVASKEYLQRHGVPKRPADLLGHDCIRYRQIASKKVASWQFEIDGMETRIEVSGRLIFSDLRSVIDAAAQGLG
IGWSLREGVAAQIESGELIEVLRDYTPHRPRFYLYFPRQLRDMTSLRAFIDHFAIGA
>Mature_297_residues
MNRADLNGLRTFLAIVECGTLRAAGDDLGVNPSAVSQQLKGFEEALGSALFVRSTRSVALTDTGQALYERTHHLMDEIDA
ALDATRHAARSTSGQLRITLPYRAWQLALAPRITAFQDHFPEIELDLSIDEELTDIVANGYHAGIRLGDYLADEMIAVAL
TKPLDGAFVASKEYLQRHGVPKRPADLLGHDCIRYRQIASKKVASWQFEIDGMETRIEVSGRLIFSDLRSVIDAAAQGLG
IGWSLREGVAAQIESGELIEVLRDYTPHRPRFYLYFPRQLRDMTSLRAFIDHFAIGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=36.3945578231293, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=31.3993174061433, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI145693193, Length=284, Percent_Identity=30.2816901408451, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=27.6223776223776, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87081978, Length=264, Percent_Identity=28.4090909090909, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=26.3513513513513, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=27.6094276094276, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1789173, Length=284, Percent_Identity=28.169014084507, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788706, Length=296, Percent_Identity=25.6756756756757, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787601, Length=204, Percent_Identity=23.5294117647059, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786448, Length=298, Percent_Identity=28.1879194630872, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790011, Length=299, Percent_Identity=22.4080267558528, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI157672245, Length=170, Percent_Identity=30, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790262, Length=123, Percent_Identity=29.2682926829268, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32982; Mature: 32982

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRADLNGLRTFLAIVECGTLRAAGDDLGVNPSAVSQQLKGFEEALGSALFVRSTRSVAL
CCCCHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEE
TDTGQALYERTHHLMDEIDAALDATRHAARSTSGQLRITLPYRAWQLALAPRITAFQDHF
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCHHHHHHCC
PEIELDLSIDEELTDIVANGYHAGIRLGDYLADEMIAVALTKPLDGAFVASKEYLQRHGV
CCEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
PKRPADLLGHDCIRYRQIASKKVASWQFEIDGMETRIEVSGRLIFSDLRSVIDAAAQGLG
CCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHCCC
IGWSLREGVAAQIESGELIEVLRDYTPHRPRFYLYFPRQLRDMTSLRAFIDHFAIGA
CCCHHHHCHHHHCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRADLNGLRTFLAIVECGTLRAAGDDLGVNPSAVSQQLKGFEEALGSALFVRSTRSVAL
CCCCHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEE
TDTGQALYERTHHLMDEIDAALDATRHAARSTSGQLRITLPYRAWQLALAPRITAFQDHF
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCHHHHHHCC
PEIELDLSIDEELTDIVANGYHAGIRLGDYLADEMIAVALTKPLDGAFVASKEYLQRHGV
CCEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
PKRPADLLGHDCIRYRQIASKKVASWQFEIDGMETRIEVSGRLIFSDLRSVIDAAAQGLG
CCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHCCC
IGWSLREGVAAQIESGELIEVLRDYTPHRPRFYLYFPRQLRDMTSLRAFIDHFAIGA
CCCHHHHCHHHHCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]