Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89053635

Identifier: 89053635

GI number: 89053635

Start: 1104986

End: 1105963

Strand: Reverse

Name: 89053635

Synonym: Jann_1144

Alternate gene names: NA

Gene position: 1105963-1104986 (Counterclockwise)

Preceding gene: 89053643

Following gene: 89053631

Centisome position: 25.61

GC content: 64.11

Gene sequence:

>978_bases
TTGGCTCGGGCGTCATCTGATCCCGCAACAAAGGATGATTTCAATCTCATCGGATCAACTCCAAATCCACAGGGTCATGT
CCTTCCAACGGGACCGCCCCCGTCCGCCGCGCCATCCGCCAGGCGGCATAGGCATCTTCCAGGGCCAGGCCCTCTGCGAC
CATTCCGCAATACCGCGTGCGCTGGTCTTCATTCATATGGTTGCACGCGGCGTCATCGGCGTCCGCCCCGGCCCGCTCCA
GCACATCCGCATACCCCTCCGCCTCCGCCGCATCGGGCAACCGCGCAACGATGGCGCCACGGGCCTCGCTCGCCCATGTT
TCAAGGTCCCCCAGGCAGGCCAAAGCGGCGTCTTGCCCTTCGCAAATCTCCATCGCCAGACCCAGACATTCAAAGCTGGC
CGTCTCCACAAGTCCCACCAGCGCATCCTGATCCTGCGGGGCCAGATCCTCCTGCAAAGAGTGTTCAAAGGCCTGATCAC
CGCCCTGCAGACAGGTCTCTGCCGCGAAGATGGCCACGGCTGCCGGTCCATGGCCTTCGGCCAGCATCGGTGTCCCGATA
CACCCGACCAAAAGGGCCAACCCTGCGTCCCGCCAGAGCATCTATTCCGCCTCCAGCCCACTTAATACATCCCAGTCCAG
CGGCCCCAGGACGCCCATTAACCGCGCGACCTGCCAGGCCCAGACGGCCTCCTCAAATTTCAGCGCCGACTGGAAACTGT
CGCACCACAGGCCGCGGCGGTAATCCCAGCCTGCGCAATCGTCGCCCGCATTGCTGCCATGGGCCAGCGCGTGGACCCTT
GCGTATAAGGGCGCCAGCGGCCCCTCCACATCACCGGGGGCAGGCAGCATCGCCCGCATATCCGCAGCCCGCGCCTCGAA
CCCTACCCGCAGACGGCGCTGACAGATCAGCGAATTGTCCGAGACCTGGCAGATCCCCATCGCCAGATACCCGCAATGCT
GCACCCAATGGACATTGA

Upstream 100 bases:

>100_bases
CCGCGAGACATGGCGCGCCCGCGACCGCTCACCCCCGCCCGCAGCCGCCAGATCCGCCGCCTCGCGGACCACGTCCAGCG
CCTCCAGATGCGCCGCACGG

Downstream 100 bases:

>100_bases
TCGCATCCAGCGCCCAACCGGCCCCGTACCCGGGGGTCAGCAAAGCCTCCTCGAACGCCTGCATCTGCTCGGGCAGACAT
ACTTCAAACCGCGGCGTGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MARASSDPATKDDFNLIGSTPNPQGHVLPTGPPPSAAPSARRHRHLPGPGPLRPFRNTACAGLHSYGCTRRHRRPPRPAP
AHPHTPPPPPHRATAQRWRHGPRSPMFQGPPGRPKRRLALRKSPSPDPDIQSWPSPQVPPAHPDPAGPDPPAKSVQRPDH
RPADRSLPRRWPRLPVHGLRPASVSRYTRPKGPTLRPARASIPPPAHLIHPSPAAPGRPLTARPARPRRPPQISAPTGNC
RTTGRGGNPSLRNRRPHCCHGPARGPLRIRAPAAPPHHRGQAASPAYPQPAPRTLPADGADRSANCPRPGRSPSPDTRNA
APNGH

Sequences:

>Translated_325_residues
MARASSDPATKDDFNLIGSTPNPQGHVLPTGPPPSAAPSARRHRHLPGPGPLRPFRNTACAGLHSYGCTRRHRRPPRPAP
AHPHTPPPPPHRATAQRWRHGPRSPMFQGPPGRPKRRLALRKSPSPDPDIQSWPSPQVPPAHPDPAGPDPPAKSVQRPDH
RPADRSLPRRWPRLPVHGLRPASVSRYTRPKGPTLRPARASIPPPAHLIHPSPAAPGRPLTARPARPRRPPQISAPTGNC
RTTGRGGNPSLRNRRPHCCHGPARGPLRIRAPAAPPHHRGQAASPAYPQPAPRTLPADGADRSANCPRPGRSPSPDTRNA
APNGH
>Mature_324_residues
ARASSDPATKDDFNLIGSTPNPQGHVLPTGPPPSAAPSARRHRHLPGPGPLRPFRNTACAGLHSYGCTRRHRRPPRPAPA
HPHTPPPPPHRATAQRWRHGPRSPMFQGPPGRPKRRLALRKSPSPDPDIQSWPSPQVPPAHPDPAGPDPPAKSVQRPDHR
PADRSLPRRWPRLPVHGLRPASVSRYTRPKGPTLRPARASIPPPAHLIHPSPAAPGRPLTARPARPRRPPQISAPTGNCR
TTGRGGNPSLRNRRPHCCHGPARGPLRIRAPAAPPHHRGQAASPAYPQPAPRTLPADGADRSANCPRPGRSPSPDTRNAA
PNGH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34974; Mature: 34843

Theoretical pI: Translated: 12.59; Mature: 12.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARASSDPATKDDFNLIGSTPNPQGHVLPTGPPPSAAPSARRHRHLPGPGPLRPFRNTAC
CCCCCCCCCCCCCCEEECCCCCCCCCEECCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHH
AGLHSYGCTRRHRRPPRPAPAHPHTPPPPPHRATAQRWRHGPRSPMFQGPPGRPKRRLAL
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHC
RKSPSPDPDIQSWPSPQVPPAHPDPAGPDPPAKSVQRPDHRPADRSLPRRWPRLPVHGLR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHCCCCCCCCCC
PASVSRYTRPKGPTLRPARASIPPPAHLIHPSPAAPGRPLTARPARPRRPPQISAPTGNC
CCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RTTGRGGNPSLRNRRPHCCHGPARGPLRIRAPAAPPHHRGQAASPAYPQPAPRTLPADGA
CCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DRSANCPRPGRSPSPDTRNAAPNGH
CCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARASSDPATKDDFNLIGSTPNPQGHVLPTGPPPSAAPSARRHRHLPGPGPLRPFRNTAC
CCCCCCCCCCCCCEEECCCCCCCCCEECCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHH
AGLHSYGCTRRHRRPPRPAPAHPHTPPPPPHRATAQRWRHGPRSPMFQGPPGRPKRRLAL
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHC
RKSPSPDPDIQSWPSPQVPPAHPDPAGPDPPAKSVQRPDHRPADRSLPRRWPRLPVHGLR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHCCCCCCCCCC
PASVSRYTRPKGPTLRPARASIPPPAHLIHPSPAAPGRPLTARPARPRRPPQISAPTGNC
CCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RTTGRGGNPSLRNRRPHCCHGPARGPLRIRAPAAPPHHRGQAASPAYPQPAPRTLPADGA
CCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DRSANCPRPGRSPSPDTRNAAPNGH
CCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA