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The map label for this gene is ygeR [H]

Identifier: 89053556

GI number: 89053556

Start: 1024549

End: 1025670

Strand: Reverse

Name: ygeR [H]

Synonym: Jann_1065

Alternate gene names: 89053556

Gene position: 1025670-1024549 (Counterclockwise)

Preceding gene: 89053558

Following gene: 89053554

Centisome position: 23.75

GC content: 69.7

Gene sequence:

>1122_bases
ATGCGCCTGATCATGCACACGACACTCGCACGCAGGCTGCCCCTGTTGGCGCCCCTGCTTCTTGCGGCCTGCGTTGGCTC
GCCGTCGGAGTGGGACTTCGATTTCCGACCCAATGCCCCGCGCGGCAATGTCACGGTCGCCGACCGGCCCGAGCCTGACA
GCCGGGGCCTTATTTCCTACGACAGCTACCAGGTGGCGATTGCCCGCAGGGGCGATACGGTCGCGGATGTGGCCACCCGC
GTTGGCCTGCCTGCGGGAGAGCTCGCCTCCTACAATGGCCGGAGCGAGGCCGACGCCCTGCGCGTGGGGGAGGTTCTGGC
CCTGCCACGCCGCGTGGATGGTGGTACGACCGGCAGCGGCACCGACATCGCCTCCATCGCGGGGGCCGCGATCAACGCCG
CCGACAGCGGCACGACCGGCGCGTCCGGTCCACAGCTTCCCGCCGGGCAAGAGCCCGTCCGCCACCGTGTGGGTCGCGGC
GAGACCGCCTATTCCGTCGCCCGCCTCTATGGGGTCTCGGTCCGCAGCCTGGCCGAATGGAACGGCCTCGGCCCAAATCT
GGCCGTGCGCGAAGGGCAATACCTTCTGATCCCCATTGTGATCGAGGCCGCCGACACCCGGGACAACAGCCGCCCGGGGG
ACAGTGTGGCCCCGCTGCCGCCGTCATCGGCCAATCCGTTGCCCGGCAGCATTGAAACGGCCGCCCTGCCCGATCTGGAA
GGCACCGGCACGGGCACAGCCGCCGCAGCACCGGCCCCTGCACCGGCGCAATCCTCGGCCCCGTTGATCCGCCCGGTCTC
CGGCTCCACCATCCGGGGCTATGGCTCCGGCAATGAAGGGATTGATATCGGGGCCAGCGCGGGCACGCCTGTCCAGGCCG
CAGCCGACGGCACCGTGGCCGCAATCACCCAGGACACCGACCAGGTGCCGATCCTGGTGATCCGCCACGCGGACGGCCTC
CTGACGGTCTATGCCAACATCCAGAACATCACGGTGTCGCGGGGCGACCGGATCAACCAGGGCCAGACCGTGGCGCAGGT
CGGGGCGGGTGATCCGTCGTTCCTCCATTTCGAGGTGCGGCGCGGGTTCGAGGCAGTGGACCCGGCGGATTTCCTACCCT
AA

Upstream 100 bases:

>100_bases
CGCCACTTGTCATCGTGCCCCTTCCGAAATCTGTCATTTGCGTGTAAACTCTACGCAAAGAGGGCTGAAGACCCCGCATA
TTGAGGAAGGTTCGAGCGCC

Downstream 100 bases:

>100_bases
GGCGCGCTGTTGCAGGGGCTACCCCCGACCCAGACCGCAAAAGACCGGCTCAAGGCGATCAACGACATGGGTCACGGCAT
CGGGGAAGATCCGTCCACGG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MRLIMHTTLARRLPLLAPLLLAACVGSPSEWDFDFRPNAPRGNVTVADRPEPDSRGLISYDSYQVAIARRGDTVADVATR
VGLPAGELASYNGRSEADALRVGEVLALPRRVDGGTTGSGTDIASIAGAAINAADSGTTGASGPQLPAGQEPVRHRVGRG
ETAYSVARLYGVSVRSLAEWNGLGPNLAVREGQYLLIPIVIEAADTRDNSRPGDSVAPLPPSSANPLPGSIETAALPDLE
GTGTGTAAAAPAPAPAQSSAPLIRPVSGSTIRGYGSGNEGIDIGASAGTPVQAAADGTVAAITQDTDQVPILVIRHADGL
LTVYANIQNITVSRGDRINQGQTVAQVGAGDPSFLHFEVRRGFEAVDPADFLP

Sequences:

>Translated_373_residues
MRLIMHTTLARRLPLLAPLLLAACVGSPSEWDFDFRPNAPRGNVTVADRPEPDSRGLISYDSYQVAIARRGDTVADVATR
VGLPAGELASYNGRSEADALRVGEVLALPRRVDGGTTGSGTDIASIAGAAINAADSGTTGASGPQLPAGQEPVRHRVGRG
ETAYSVARLYGVSVRSLAEWNGLGPNLAVREGQYLLIPIVIEAADTRDNSRPGDSVAPLPPSSANPLPGSIETAALPDLE
GTGTGTAAAAPAPAPAQSSAPLIRPVSGSTIRGYGSGNEGIDIGASAGTPVQAAADGTVAAITQDTDQVPILVIRHADGL
LTVYANIQNITVSRGDRINQGQTVAQVGAGDPSFLHFEVRRGFEAVDPADFLP
>Mature_373_residues
MRLIMHTTLARRLPLLAPLLLAACVGSPSEWDFDFRPNAPRGNVTVADRPEPDSRGLISYDSYQVAIARRGDTVADVATR
VGLPAGELASYNGRSEADALRVGEVLALPRRVDGGTTGSGTDIASIAGAAINAADSGTTGASGPQLPAGQEPVRHRVGRG
ETAYSVARLYGVSVRSLAEWNGLGPNLAVREGQYLLIPIVIEAADTRDNSRPGDSVAPLPPSSANPLPGSIETAALPDLE
GTGTGTAAAAPAPAPAQSSAPLIRPVSGSTIRGYGSGNEGIDIGASAGTPVQAAADGTVAAITQDTDQVPILVIRHADGL
LTVYANIQNITVSRGDRINQGQTVAQVGAGDPSFLHFEVRRGFEAVDPADFLP

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=231, Percent_Identity=29.004329004329, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1789099, Length=115, Percent_Identity=33.9130434782609, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 38297; Mature: 38297

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLIMHTTLARRLPLLAPLLLAACVGSPSEWDFDFRPNAPRGNVTVADRPEPDSRGLISY
CEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEE
DSYQVAIARRGDTVADVATRVGLPAGELASYNGRSEADALRVGEVLALPRRVDGGTTGSG
CCEEEEEEECCCHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
TDIASIAGAAINAADSGTTGASGPQLPAGQEPVRHRVGRGETAYSVARLYGVSVRSLAEW
CHHHHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCHHHHHHHH
NGLGPNLAVREGQYLLIPIVIEAADTRDNSRPGDSVAPLPPSSANPLPGSIETAALPDLE
CCCCCCEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GTGTGTAAAAPAPAPAQSSAPLIRPVSGSTIRGYGSGNEGIDIGASAGTPVQAAADGTVA
CCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCEEECCCCCCCCEECCCCEEE
AITQDTDQVPILVIRHADGLLTVYANIQNITVSRGDRINQGQTVAQVGAGDPSFLHFEVR
EEECCCCCCCEEEEEECCCEEEEEEEEEEEEEECCCCCCCCCEEEEECCCCCCEEEEEHH
RGFEAVDPADFLP
CCCCCCCCHHCCC
>Mature Secondary Structure
MRLIMHTTLARRLPLLAPLLLAACVGSPSEWDFDFRPNAPRGNVTVADRPEPDSRGLISY
CEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEE
DSYQVAIARRGDTVADVATRVGLPAGELASYNGRSEADALRVGEVLALPRRVDGGTTGSG
CCEEEEEEECCCHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
TDIASIAGAAINAADSGTTGASGPQLPAGQEPVRHRVGRGETAYSVARLYGVSVRSLAEW
CHHHHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCHHHHHHHH
NGLGPNLAVREGQYLLIPIVIEAADTRDNSRPGDSVAPLPPSSANPLPGSIETAALPDLE
CCCCCCEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GTGTGTAAAAPAPAPAQSSAPLIRPVSGSTIRGYGSGNEGIDIGASAGTPVQAAADGTVA
CCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCEEECCCCCCCCEECCCCEEE
AITQDTDQVPILVIRHADGLLTVYANIQNITVSRGDRINQGQTVAQVGAGDPSFLHFEVR
EEECCCCCCCEEEEEECCCEEEEEEEEEEEEEECCCCCCCCCEEEEECCCCCCEEEEEHH
RGFEAVDPADFLP
CCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]