| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053433
Identifier: 89053433
GI number: 89053433
Start: 900451
End: 900879
Strand: Reverse
Name: 89053433
Synonym: Jann_0942
Alternate gene names: NA
Gene position: 900879-900451 (Counterclockwise)
Preceding gene: 89053435
Following gene: 89053430
Centisome position: 20.86
GC content: 63.64
Gene sequence:
>429_bases ATGGATATCAAACGCATCGCCCCCGCCCTCGCCCTTCCCTTTGCCCTGTTCGCCGCCGCGCCTGCGATGGCCGAGCCCTC ATGCTCCGGCGGTGGTTACGCTGCCGATGCGCTGATCGTGCCCAGCAACTCTATTGGCGTGATCGAAAGCTCAACCCAGT ATGCCTGGGACGGTGGTGGCCGTATCGTGGAGGTCTGCAACCTGCTGACCGAGGGCGGCGACTTCTTCGCCACATGGTCG CTGTTTTCCGGTGAGGTCGATACCGCCTATCCAGGCATCTGCGTGTCCCTCACGAACGCCGACGGGATTGAGTGGTACTC GTGCCACACACCTGAGGCCGTCGCAGCCGCCTTCGCCGCCGCACCGCAGACAGAGGCGGGCATCCTTCGGTTTGAAGGAT GGTCGGACCAGGCCCCCATGCTGCAATAA
Upstream 100 bases:
>100_bases CGCCATTCGTACCGCTCCCGTTTCAGCAGATATCTGGTCAAACGTCGCACCACGAAAAGGAGAATTGACATAAGTCCCGC CCCGCGCCCAAAAAGCGCCT
Downstream 100 bases:
>100_bases GCCGGTAGCTGACACGGGCACATCAGCCCCTGTTGTGTCCCGGCATCCCGATTTCGAAACAAAAAAGGGCCGCGCAATGC GGCCCTTCTGCATACTGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 142; Mature: 142
Protein sequence:
>142_residues MDIKRIAPALALPFALFAAAPAMAEPSCSGGGYAADALIVPSNSIGVIESSTQYAWDGGGRIVEVCNLLTEGGDFFATWS LFSGEVDTAYPGICVSLTNADGIEWYSCHTPEAVAAAFAAAPQTEAGILRFEGWSDQAPMLQ
Sequences:
>Translated_142_residues MDIKRIAPALALPFALFAAAPAMAEPSCSGGGYAADALIVPSNSIGVIESSTQYAWDGGGRIVEVCNLLTEGGDFFATWS LFSGEVDTAYPGICVSLTNADGIEWYSCHTPEAVAAAFAAAPQTEAGILRFEGWSDQAPMLQ >Mature_142_residues MDIKRIAPALALPFALFAAAPAMAEPSCSGGGYAADALIVPSNSIGVIESSTQYAWDGGGRIVEVCNLLTEGGDFFATWS LFSGEVDTAYPGICVSLTNADGIEWYSCHTPEAVAAAFAAAPQTEAGILRFEGWSDQAPMLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14768; Mature: 14768
Theoretical pI: Translated: 3.72; Mature: 3.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIKRIAPALALPFALFAAAPAMAEPSCSGGGYAADALIVPSNSIGVIESSTQYAWDGGG CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCEEECCCC RIVEVCNLLTEGGDFFATWSLFSGEVDTAYPGICVSLTNADGIEWYSCHTPEAVAAAFAA HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCHHHHHHHHC APQTEAGILRFEGWSDQAPMLQ CCCCCCCEEEECCCCCCCCCCC >Mature Secondary Structure MDIKRIAPALALPFALFAAAPAMAEPSCSGGGYAADALIVPSNSIGVIESSTQYAWDGGG CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCEEECCCC RIVEVCNLLTEGGDFFATWSLFSGEVDTAYPGICVSLTNADGIEWYSCHTPEAVAAAFAA HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCHHHHHHHHC APQTEAGILRFEGWSDQAPMLQ CCCCCCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA