| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89053419
Identifier: 89053419
GI number: 89053419
Start: 884085
End: 885167
Strand: Reverse
Name: 89053419
Synonym: Jann_0928
Alternate gene names: NA
Gene position: 885167-884085 (Counterclockwise)
Preceding gene: 89053420
Following gene: 89053417
Centisome position: 20.5
GC content: 62.7
Gene sequence:
>1083_bases ATGAAACTCACCACCAAACTAATGACCAGTGCTGCGCTGGCCATGGGCCTGACGGGGGCGGCGATCGCGCAAGACGATCC GTTCCAGATAGGGTTTGTCTATGTCGGGCCAATTGGCGATTACGGCTGGACCTGGACCCACGATCAGGGCCGTCTCGCCG TGGAAGAGGCGTTCGGCGACGATGTCGAAACGGTCTTCGCGGAAAGTGTGCCAGAGGGCGCGGACGCCGAGCGCGTCATT CAGAACATGGTTCTGGGCGGCGCGGACATGATCTTCACCACCTCCTTCGGCTATGGCGAAGCGACAAATGCCGTCGCGGG CCAGTTCCCCGACGTCTATTTCGAACACGCCACCGGCTACCTGCGCGAACATGAAAACGTGTCGACCTATTCGGCACGCT TCTATCAGGGCCGCGCCGTCATCGGCCACATCGCGGGCCAGATGACCGAATCCAACATCGTGGGCTACATCGCATCCTAT CCGATCCCCGAAGTGATCCGGGGCATCAATGCCGCGTATCTGCACGCGCGCGAAGTGAACCCGGATGTCGAGTTCCGCGT GATCTGGGTCTACACATGGTTCGATCCGGCGGAAGAAGCCTCTGCCGCCCAGGCCCTGATTGATGCGGGTGCAGACGTGA TCATGCAGCACACCGACAGCACCGCACCGCAGGCCGCGGCCCAGGAAGCGGGCAATGTCTACACCTTCGGCCAGGCCTCT GACATGATCCAGTTCGCGCCCACGCCGCGGATCTCGTCGATCATCGACAATTGGGGCCCCTACTACGTTCGCCGCGTCGG TGAGGCGATGGAGGGCACCTGGGCGCAATCCGACACCTGGGAAGGCATGACCGAAGGCATGGTCGTGATCGGCGAGATGA CCGATGCGATCCCGGAAGAGGTGCGCGCCTCGGCGCTGGACCTGATGGAAGGGATGCAGAGCGGCACGTACCACCCCTTC ACCGGCCCGATCAACCGGCAGGACGGCACCGCATGGCTGGCCGATGGCGAGGTCGCCGATGACGGTACGCTTGCGGGCAT GGACTTCTATGTGGAAGGGATCACGGGCGAAATCCCGAACTGA
Upstream 100 bases:
>100_bases CTCCCAAAAGCGCATCGCCGGTTCAGGTCGACATGCGCCCCGGGACACCGGCCCTGCCATCAGATACAGAGACACCAGAA TCCAACAGAGGGGATGATTC
Downstream 100 bases:
>100_bases TCGCGTCTTCGGCACGGCAACGAAAAAGGCCCGCTGATCATCCAGCGGGCCTTTCTTATGGCGATTGGGACGCGTTAGGT CCGGTGTTTGCGGCGGGCCA
Product: basic membrane lipoprotein
Products: NA
Alternate protein names: Bmp Family Protein; Basic Membrane Protein; Lipoprotein; Bmp Family Membrane Protein; ABC Transporter Periplasmic/Surface Lipoprotein; ABC Transporter; Lipoprotein Periplasmic Protein; ABC Transporter Periplasmic Protein Surface Lipoprotein; Basic Membrane Lipoprotein Family; Twin-Arginine Translocation Pathway Signal; Outer Membrane Lipoprotein; Transcriptional Activator Of ComK Gene; Tat Pathway Signal Sequence/Basic Membrane Protein; Basic Membrane Lipoprotein Family Protein; Basic Membrane Protein Family Protein; Surface Lipoprotein; Basic Membrane Protein A-Like Protein; Signal Peptide Protein; ABC Transporter Periplasmic Protein; ABC-Type Transport Periplasmic Component
Number of amino acids: Translated: 360; Mature: 360
Protein sequence:
>360_residues MKLTTKLMTSAALAMGLTGAAIAQDDPFQIGFVYVGPIGDYGWTWTHDQGRLAVEEAFGDDVETVFAESVPEGADAERVI QNMVLGGADMIFTTSFGYGEATNAVAGQFPDVYFEHATGYLREHENVSTYSARFYQGRAVIGHIAGQMTESNIVGYIASY PIPEVIRGINAAYLHAREVNPDVEFRVIWVYTWFDPAEEASAAQALIDAGADVIMQHTDSTAPQAAAQEAGNVYTFGQAS DMIQFAPTPRISSIIDNWGPYYVRRVGEAMEGTWAQSDTWEGMTEGMVVIGEMTDAIPEEVRASALDLMEGMQSGTYHPF TGPINRQDGTAWLADGEVADDGTLAGMDFYVEGITGEIPN
Sequences:
>Translated_360_residues MKLTTKLMTSAALAMGLTGAAIAQDDPFQIGFVYVGPIGDYGWTWTHDQGRLAVEEAFGDDVETVFAESVPEGADAERVI QNMVLGGADMIFTTSFGYGEATNAVAGQFPDVYFEHATGYLREHENVSTYSARFYQGRAVIGHIAGQMTESNIVGYIASY PIPEVIRGINAAYLHAREVNPDVEFRVIWVYTWFDPAEEASAAQALIDAGADVIMQHTDSTAPQAAAQEAGNVYTFGQAS DMIQFAPTPRISSIIDNWGPYYVRRVGEAMEGTWAQSDTWEGMTEGMVVIGEMTDAIPEEVRASALDLMEGMQSGTYHPF TGPINRQDGTAWLADGEVADDGTLAGMDFYVEGITGEIPN >Mature_360_residues MKLTTKLMTSAALAMGLTGAAIAQDDPFQIGFVYVGPIGDYGWTWTHDQGRLAVEEAFGDDVETVFAESVPEGADAERVI QNMVLGGADMIFTTSFGYGEATNAVAGQFPDVYFEHATGYLREHENVSTYSARFYQGRAVIGHIAGQMTESNIVGYIASY PIPEVIRGINAAYLHAREVNPDVEFRVIWVYTWFDPAEEASAAQALIDAGADVIMQHTDSTAPQAAAQEAGNVYTFGQAS DMIQFAPTPRISSIIDNWGPYYVRRVGEAMEGTWAQSDTWEGMTEGMVVIGEMTDAIPEEVRASALDLMEGMQSGTYHPF TGPINRQDGTAWLADGEVADDGTLAGMDFYVEGITGEIPN
Specific function: Unknown
COG id: COG1744
COG function: function code R; Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39001; Mature: 39001
Theoretical pI: Translated: 3.88; Mature: 3.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLTTKLMTSAALAMGLTGAAIAQDDPFQIGFVYVGPIGDYGWTWTHDQGRLAVEEAFGD CCCHHHHHHHHHHHHCCCCCEECCCCCEEEEEEEEECCCCCCCEEECCCCCEEEHHHCCC DVETVFAESVPEGADAERVIQNMVLGGADMIFTTSFGYGEATNAVAGQFPDVYFEHATGY CHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHCCCCHHHHHHHHHH LREHENVSTYSARFYQGRAVIGHIAGQMTESNIVGYIASYPIPEVIRGINAAYLHAREVN HHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCEEEHHCCCHHHHHHCCCCEEEEEEECC PDVEFRVIWVYTWFDPAEEASAAQALIDAGADVIMQHTDSTAPQAAAQEAGNVYTFGQAS CCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCEEEECCCC DMIQFAPTPRISSIIDNWGPYYVRRVGEAMEGTWAQSDTWEGMTEGMVVIGEMTDAIPEE CCEEECCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHH VRASALDLMEGMQSGTYHPFTGPINRQDGTAWLADGEVADDGTLAGMDFYVEGITGEIPN HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEECCCCEEECCEEEEECCCCCCCC >Mature Secondary Structure MKLTTKLMTSAALAMGLTGAAIAQDDPFQIGFVYVGPIGDYGWTWTHDQGRLAVEEAFGD CCCHHHHHHHHHHHHCCCCCEECCCCCEEEEEEEEECCCCCCCEEECCCCCEEEHHHCCC DVETVFAESVPEGADAERVIQNMVLGGADMIFTTSFGYGEATNAVAGQFPDVYFEHATGY CHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHCCCCHHHHHHHHHH LREHENVSTYSARFYQGRAVIGHIAGQMTESNIVGYIASYPIPEVIRGINAAYLHAREVN HHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCEEEHHCCCHHHHHHCCCCEEEEEEECC PDVEFRVIWVYTWFDPAEEASAAQALIDAGADVIMQHTDSTAPQAAAQEAGNVYTFGQAS CCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCEEEECCCC DMIQFAPTPRISSIIDNWGPYYVRRVGEAMEGTWAQSDTWEGMTEGMVVIGEMTDAIPEE CCEEECCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHH VRASALDLMEGMQSGTYHPFTGPINRQDGTAWLADGEVADDGTLAGMDFYVEGITGEIPN HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEECCCCEEECCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA