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The map label for this gene is rpoE [C]

Identifier: 89053333

GI number: 89053333

Start: 798156

End: 798758

Strand: Reverse

Name: rpoE [C]

Synonym: Jann_0842

Alternate gene names: 89053333

Gene position: 798758-798156 (Counterclockwise)

Preceding gene: 89053337

Following gene: 89053332

Centisome position: 18.5

GC content: 64.68

Gene sequence:

>603_bases
ATGCAGAAATATTTCGTGAGCCCACCCAAGGATTGCCGGATCACCCCCGTCCTAAGGTATGACATGCGCATGAATGTGAG
TGATGAGGACCTGGCCCTGGCGGCGGCAGGGGGCGACGGGGCCGCGTATCAGCTGTTGCTGACGCGGGTCTACGACCGCC
TGTTCGGCCTGTGCTTTCGGCTGACCGGAAGCCGGACCGAGGCGGAAGACCTGACCCAGGACATCTGCCTTGCGCTGCCC
GGCAAGCTCTCGGGTTACCGCGCGCAGGCGAAGGTGACGACATGGCTTTACCGGGTGGCGGTGAATGCGGCGACGGATCG
GCGCAGGCGGAAAGCCAGCTACACCCGCGCCACGCAGGGCTGGGGCGCGTGGGAGGTGGACCGCGTCCAGACGGCGCAGG
AAGCGACGGCGGGGGCTCGGTGGCTCTACCGGACGATGGCTTTGCTGCCCACCCATCTGCACGACACGCTGGCGTTGGTG
CTTGATGATGTCACCCACGCAGAGGCCGCCGAGATCCTTGGCGTGTCGGAAGGCACAATCAGTTGGCGCGTCGCGGAAGC
GAAGAAAAAGTTGCGCGAAATCAAAGAGAGGGAGGACGCATGA

Upstream 100 bases:

>100_bases
CGGCCTGAACGCCGTAAGGCCTTCGCTTTGAGCCTCGGGCACCCCCAGGTCAAGGAGTTTTTGAGATTGTGGGTCTCAAT
TTCCTCTACATCCGGATCAA

Downstream 100 bases:

>100_bases
CCTCCAAGGATACCAATCTGGACGACCTCAAGCGTGCGATGGCAAATGCCACGCCCACACCCAATGCCGCGCACAAGGCC
GAGGCCATGGCGCGCTCATT

Product: FecI-like sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MQKYFVSPPKDCRITPVLRYDMRMNVSDEDLALAAAGGDGAAYQLLLTRVYDRLFGLCFRLTGSRTEAEDLTQDICLALP
GKLSGYRAQAKVTTWLYRVAVNAATDRRRRKASYTRATQGWGAWEVDRVQTAQEATAGARWLYRTMALLPTHLHDTLALV
LDDVTHAEAAEILGVSEGTISWRVAEAKKKLREIKEREDA

Sequences:

>Translated_200_residues
MQKYFVSPPKDCRITPVLRYDMRMNVSDEDLALAAAGGDGAAYQLLLTRVYDRLFGLCFRLTGSRTEAEDLTQDICLALP
GKLSGYRAQAKVTTWLYRVAVNAATDRRRRKASYTRATQGWGAWEVDRVQTAQEATAGARWLYRTMALLPTHLHDTLALV
LDDVTHAEAAEILGVSEGTISWRVAEAKKKLREIKEREDA
>Mature_200_residues
MQKYFVSPPKDCRITPVLRYDMRMNVSDEDLALAAAGGDGAAYQLLLTRVYDRLFGLCFRLTGSRTEAEDLTQDICLALP
GKLSGYRAQAKVTTWLYRVAVNAATDRRRRKASYTRATQGWGAWEVDRVQTAQEATAGARWLYRTMALLPTHLHDTLALV
LDDVTHAEAAEILGVSEGTISWRVAEAKKKLREIKEREDA

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22451; Mature: 22451

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKYFVSPPKDCRITPVLRYDMRMNVSDEDLALAAAGGDGAAYQLLLTRVYDRLFGLCFR
CCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
LTGSRTEAEDLTQDICLALPGKLSGYRAQAKVTTWLYRVAVNAATDRRRRKASYTRATQG
HCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
WGAWEVDRVQTAQEATAGARWLYRTMALLPTHLHDTLALVLDDVTHAEAAEILGVSEGTI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
SWRVAEAKKKLREIKEREDA
EEEHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQKYFVSPPKDCRITPVLRYDMRMNVSDEDLALAAAGGDGAAYQLLLTRVYDRLFGLCFR
CCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
LTGSRTEAEDLTQDICLALPGKLSGYRAQAKVTTWLYRVAVNAATDRRRRKASYTRATQG
HCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
WGAWEVDRVQTAQEATAGARWLYRTMALLPTHLHDTLALVLDDVTHAEAAEILGVSEGTI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
SWRVAEAKKKLREIKEREDA
EEEHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA