| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053330
Identifier: 89053330
GI number: 89053330
Start: 794499
End: 795212
Strand: Reverse
Name: 89053330
Synonym: Jann_0839
Alternate gene names: NA
Gene position: 795212-794499 (Counterclockwise)
Preceding gene: 89053332
Following gene: 89053329
Centisome position: 18.42
GC content: 66.39
Gene sequence:
>714_bases TTGGCCGCTCATCCATCCGTTTCAACCCATGTCCTGCCCGGCGACCCGCCGGTGGAGGTGATGTTGCGCCGAAATGCGCG GGCCAAACGGTTTTCCCTGCGGGTCAGCCGGTCAGACGGGCGGGTGTCACTCTCCCTGCCAACCTGGGCGCCTGAATCTG AAGCACTGGCATTCCTGCGGGAGAGAGAGGATTGGGTGCGGGAGCATCTTGGCCGCTCACCGGGCGTTCTACGCGCGCAG ATCGGGGCGGAAATCCCCGTCTGCGGCATCCCGCGCGCCGTAGTGGCAGGGACCGGCCGCGCTGCGCGGTTTGTCGACGG CGCGTTGCAGGTGCCCGAAGGCCCGAGGGAGGGACCCCGTCTCAAAGCGCTGCTGTCGGCCATGGCGCGGGAGCGGTTGT CGGAGGCCGTCGCAATCCACGCTGCTGCCATTGGGAAAAGATACGGGCGCATGACCCTGCGCGATCCCCGGTCCCGCTGG GGCAGTTGTTCGTCGAAGGGCGATCTGATGTTTTCGTGGCGGCTGATCATGGCCCCACCCGCCGTACTGGACTACGTCGC GGCCCATGAGGTTGCGCATTTGGTGGAGATGAACCATTCGGCGCGGTTCTGGGCTTTGTGCAAACAATTGTGCCCGACCA CAGACCAGCACCGCCGCTGGATGCGCGCCCACGGGGCGGAGCTTCTGGCCTGGCGGTTTGAGGCGCAGGAGTGA
Upstream 100 bases:
>100_bases AATCGCCGGTTTCGCGAGAACCCGCGCTCTGCCATAGTGGCTGGGGACTGTCAAAGCCTTTCACGGCGCAGGCGCTGTCC CACAGTTTGGAGCTTCTTAT
Downstream 100 bases:
>100_bases TGCCATGCTGATGAACCCCCGCCCCACGGAAACCGGCGCCGCCGTGGCCCATGACCGGGTCTACCGCGCATTGCGCTCTC GCATCATGTACGGCGAGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 237; Mature: 236
Protein sequence:
>237_residues MAAHPSVSTHVLPGDPPVEVMLRRNARAKRFSLRVSRSDGRVSLSLPTWAPESEALAFLREREDWVREHLGRSPGVLRAQ IGAEIPVCGIPRAVVAGTGRAARFVDGALQVPEGPREGPRLKALLSAMARERLSEAVAIHAAAIGKRYGRMTLRDPRSRW GSCSSKGDLMFSWRLIMAPPAVLDYVAAHEVAHLVEMNHSARFWALCKQLCPTTDQHRRWMRAHGAELLAWRFEAQE
Sequences:
>Translated_237_residues MAAHPSVSTHVLPGDPPVEVMLRRNARAKRFSLRVSRSDGRVSLSLPTWAPESEALAFLREREDWVREHLGRSPGVLRAQ IGAEIPVCGIPRAVVAGTGRAARFVDGALQVPEGPREGPRLKALLSAMARERLSEAVAIHAAAIGKRYGRMTLRDPRSRW GSCSSKGDLMFSWRLIMAPPAVLDYVAAHEVAHLVEMNHSARFWALCKQLCPTTDQHRRWMRAHGAELLAWRFEAQE >Mature_236_residues AAHPSVSTHVLPGDPPVEVMLRRNARAKRFSLRVSRSDGRVSLSLPTWAPESEALAFLREREDWVREHLGRSPGVLRAQI GAEIPVCGIPRAVVAGTGRAARFVDGALQVPEGPREGPRLKALLSAMARERLSEAVAIHAAAIGKRYGRMTLRDPRSRWG SCSSKGDLMFSWRLIMAPPAVLDYVAAHEVAHLVEMNHSARFWALCKQLCPTTDQHRRWMRAHGAELLAWRFEAQE
Specific function: Unknown
COG id: COG1451
COG function: function code R; Predicted metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26375; Mature: 26244
Theoretical pI: Translated: 11.05; Mature: 11.05
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAHPSVSTHVLPGDPPVEVMLRRNARAKRFSLRVSRSDGRVSLSLPTWAPESEALAFLR CCCCCCCCEEECCCCCHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHH EREDWVREHLGRSPGVLRAQIGAEIPVCGIPRAVVAGTGRAARFVDGALQVPEGPREGPR HHHHHHHHHCCCCCCEEEHHCCCCCCCCCCCHHHHHCCCCHHHHHCCHHCCCCCCCCCHH LKALLSAMARERLSEAVAIHAAAIGKRYGRMTLRDPRSRWGSCSSKGDLMFSWRLIMAPP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEEEEEEEECCCH AVLDYVAAHEVAHLVEMNHSARFWALCKQLCPTTDQHRRWMRAHGAELLAWRFEAQE HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCC >Mature Secondary Structure AAHPSVSTHVLPGDPPVEVMLRRNARAKRFSLRVSRSDGRVSLSLPTWAPESEALAFLR CCCCCCCEEECCCCCHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHH EREDWVREHLGRSPGVLRAQIGAEIPVCGIPRAVVAGTGRAARFVDGALQVPEGPREGPR HHHHHHHHHCCCCCCEEEHHCCCCCCCCCCCHHHHHCCCCHHHHHCCHHCCCCCCCCCHH LKALLSAMARERLSEAVAIHAAAIGKRYGRMTLRDPRSRWGSCSSKGDLMFSWRLIMAPP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEEEEEEEECCCH AVLDYVAAHEVAHLVEMNHSARFWALCKQLCPTTDQHRRWMRAHGAELLAWRFEAQE HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA