| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053085
Identifier: 89053085
GI number: 89053085
Start: 577979
End: 578413
Strand: Reverse
Name: 89053085
Synonym: Jann_0594
Alternate gene names: NA
Gene position: 578413-577979 (Counterclockwise)
Preceding gene: 89053086
Following gene: 89053072
Centisome position: 13.4
GC content: 59.77
Gene sequence:
>435_bases ATGATGAACACTGCGCTCGACACCGCCTTCCACCGCCTTGACACGCTCGACCTCTCCGCCATTCAATCCACAGGCGATTG GGATCTGGGGCGAACCTTTAGCCACCTCGCCCAGGGGGTGGAATTCTCAATGACGGGCTACCCGCAAGAGAAGCCCCGTC TGTTTCAGATGACGGCGGGCAAGCTGGCGTTCACCGTGTTCAAACTGCGTGGCCGGATGAGCCACGGTCTGGACGAACCG ATCCCCGGTGAGGTGATTGGAGAGGTCTCAGCGGATGACGGCCTGCACCGTCTGTGGTCGTCCCTAGAGCAATTCCGCGA CTTCAACGGAGCGCTGCAACCCCATTTTGCGTTCGGCGCATTGGGCAAAGACCAGTTTGCCATGGCGCATCTGATGCATA TTGAGAACCACCTGGAAGAGGTGCGGCCGACCTAG
Upstream 100 bases:
>100_bases GTCGTGGGAGACGTTCGAGCAGGGGGTGGAGCGGATTTGGCCGCGAGGGTGACACGTTTCGCTGGACGGAACTGGCGCTT GCGGTGTTATCCTTGGCGGC
Downstream 100 bases:
>100_bases TCCCCGACCCCCGATCAAAGGGCCCGGCGCCCCCGCACCACGAACATCCACCCCAGCAGGGAAATGATCGCACATGCGAT CAACCCCAGACCCCGTTCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 144; Mature: 144
Protein sequence:
>144_residues MMNTALDTAFHRLDTLDLSAIQSTGDWDLGRTFSHLAQGVEFSMTGYPQEKPRLFQMTAGKLAFTVFKLRGRMSHGLDEP IPGEVIGEVSADDGLHRLWSSLEQFRDFNGALQPHFAFGALGKDQFAMAHLMHIENHLEEVRPT
Sequences:
>Translated_144_residues MMNTALDTAFHRLDTLDLSAIQSTGDWDLGRTFSHLAQGVEFSMTGYPQEKPRLFQMTAGKLAFTVFKLRGRMSHGLDEP IPGEVIGEVSADDGLHRLWSSLEQFRDFNGALQPHFAFGALGKDQFAMAHLMHIENHLEEVRPT >Mature_144_residues MMNTALDTAFHRLDTLDLSAIQSTGDWDLGRTFSHLAQGVEFSMTGYPQEKPRLFQMTAGKLAFTVFKLRGRMSHGLDEP IPGEVIGEVSADDGLHRLWSSLEQFRDFNGALQPHFAFGALGKDQFAMAHLMHIENHLEEVRPT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16159; Mature: 16159
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNTALDTAFHRLDTLDLSAIQSTGDWDLGRTFSHLAQGVEFSMTGYPQEKPRLFQMTAG CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECCCCCCCCEEEHHHHH KLAFTVFKLRGRMSHGLDEPIPGEVIGEVSADDGLHRLWSSLEQFRDFNGALQPHFAFGA HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCC LGKDQFAMAHLMHIENHLEEVRPT CCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MMNTALDTAFHRLDTLDLSAIQSTGDWDLGRTFSHLAQGVEFSMTGYPQEKPRLFQMTAG CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECCCCCCCCEEEHHHHH KLAFTVFKLRGRMSHGLDEPIPGEVIGEVSADDGLHRLWSSLEQFRDFNGALQPHFAFGA HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCC LGKDQFAMAHLMHIENHLEEVRPT CCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA